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Popular repositories

  1. PlasmidSeeker PlasmidSeeker Public

    A k-mer based program for the identification of known plasmids from whole-genome sequencing reads

    Perl 35 11

  2. GenomeTester4 GenomeTester4 Public

    A toolkit for performing set operations - union, intersection and complement - on k-mer lists.

    C 33 14

  3. PhenotypeSeeker PhenotypeSeeker Public

    Identify phenotype-specific k-mers and predict phenotype using sequenced bacterial strains

    Python 17 10

  4. AluMine AluMine Public

    Scripts for discovery and genotyping polymorphic Alu element insertions in human genomes

    Perl 6 2

  5. GeneToCN GeneToCN Public

    Gene copy number prediction from k-mer frequencies

    Python 6 1

  6. PlantTaxSeeker PlantTaxSeeker Public

    A pipeline to indentify taxon-specific k-mers in plant genomes

    Python 4