This repository contains short code to transform raw data of dataset Myctobase, a circumpolar database of mesopelagic fishes for new insights into deep pelagic prey fields - data
The raw data is available at Zenodo:
Darwin Core formatted of this dataset is published in the portals below.
| portal | link |
|---|---|
| IPT | |
| GBIF | |
| OBIS |
.
├── README.md : description of this repository
├── myctobase.Rproj : R Project
├── data : directory to store data
│ └── processed : directory to store processed data
├── html : HTML of knitted Rmd files
│ └── transform-data.html
├── renv : renv files for dependencies
├── renv.lock : describe the state of project's library
└── src
│ └── transform-data.Rmd : Rmarkdown file of the code
Knitted Rmarkdown can be rendered at https://raw.githack.com/biodiversity-aq/myctobase/main/html/transform-data.html
If dependencies are not automatically installed by renv when you open SO_isotopes.Rproj, try the following command.
renv::restore()
You can run chunks of R code in transform-data.Rmd or knit them into html.