humboldt-for-eco-survey-data

This repository contains script to infer non-detection of target taxa of a marine ecological survey dataset using Humboldt Extension.

Repo structure

.
├── README.md           
├── humboldt.Rproj      : R project file
├── images              : directory to store images used in Rmd file
├── renv                : renv files for dependencies
├── renv.lock           : describe the state of project's library
└── src
    ├── mapping.Rmd     : Rmarkdown file of the code 
    └── mapping.html    : HTML of knitted Rmd files 

Knitted Rmarkdown can be rendered at https://raw.githack.com/ymgan/humboldt-for-eco-survey-data/main/src/mapping.html

Getting started

This project uses renv to manage the virtual environment. If dependencies are not automatically installed by renv when you open humboldt.Rproj, please try the following command.

renv::restore()