Jupyter notebooks to assist with sample processing

A private microservice to support The Microsetta Initiative

The Biological Observation Matrix (BIOM) Format Project

exploratory and interactive microbiome analyses based on heatmaps

Aggregate genome coverage

The Microsetta participant facing user interface

Gemelli is a tool box for running Robust Aitchison PCA (RPCA), Joint Robust Aitchison PCA (Joint-RPCA), TEMPoral TEnsor Decomposition (TEMPTED), and Compositional Tensor Factorization (CTF) on sparse compositional omics datasets.

Knight Lab internal Metagenomic processing scripts for demultiplexing, QC and host removal

Snakemake workflow for comparison of differential abundance ranks