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Add Linux aarch64 build for more Bioconductor packages #47730

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merged 2 commits into from May 8, 2024

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@martin-g martin-g commented May 7, 2024

  • affyio
  • beclear
  • bus
  • edger
  • graph
  • rhdf5filters
  • sparsematrixstats

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- affyio
- beclear
- bus
- ebimage
- edger
- graph
- rhdf5filters
- sparsematrixstats

Signed-off-by: Martin Tzvetanov Grigorov <mgrigorov@apache.org>
Update edgeR to 4.0.16

Signed-off-by: Martin Tzvetanov Grigorov <mgrigorov@apache.org>
@martin-g martin-g force-pushed the aarch64-bioconductor-bulk-3 branch from 7f1b26a to f50903e Compare May 7, 2024 18:18
@mencian mencian merged commit f0908ab into bioconda:master May 8, 2024
6 checks passed
@martin-g martin-g deleted the aarch64-bioconductor-bulk-3 branch May 8, 2024 05:46
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martin-g commented May 8, 2024

@BiocondaBot please fetch artifacts

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Package(s) built are ready for inspection:

Arch Package Zip File / Repodata CI Instructions
linux-64 bioconductor-affyio-1.72.0-r43ha9d7317_1.tar.bz2 LinuxArtifacts.zip Azure
showYou may also use conda to install after downloading and extracting the zip file. From the LinuxArtifacts directory: conda install -c ./packages <package name>
linux-64 bioconductor-beclear-2.18.0-r43hf17093f_1.tar.bz2 LinuxArtifacts.zip Azure
showYou may also use conda to install after downloading and extracting the zip file. From the LinuxArtifacts directory: conda install -c ./packages <package name>
linux-64 bioconductor-bus-1.58.0-r43hf17093f_1.tar.bz2 LinuxArtifacts.zip Azure
showYou may also use conda to install after downloading and extracting the zip file. From the LinuxArtifacts directory: conda install -c ./packages <package name>
linux-64 bioconductor-edger-4.0.16-r43hf17093f_1.tar.bz2 LinuxArtifacts.zip Azure
showYou may also use conda to install after downloading and extracting the zip file. From the LinuxArtifacts directory: conda install -c ./packages <package name>
linux-64 bioconductor-graph-1.80.0-r43ha9d7317_1.tar.bz2 LinuxArtifacts.zip Azure
showYou may also use conda to install after downloading and extracting the zip file. From the LinuxArtifacts directory: conda install -c ./packages <package name>
linux-64 bioconductor-rhdf5filters-1.14.1-r43hf17093f_1.tar.bz2 LinuxArtifacts.zip Azure
showYou may also use conda to install after downloading and extracting the zip file. From the LinuxArtifacts directory: conda install -c ./packages <package name>
linux-64 bioconductor-sparsematrixstats-1.14.0-r43hf17093f_1.tar.bz2 LinuxArtifacts.zip Azure
showYou may also use conda to install after downloading and extracting the zip file. From the LinuxArtifacts directory: conda install -c ./packages <package name>
osx-64 bioconductor-affyio-1.72.0-r43h4c50009_1.tar.bz2 OSXArtifacts.zip Azure
showYou may also use conda to install after downloading and extracting the zip file. From the OSXArtifacts directory: conda install -c ./packages <package name>
osx-64 bioconductor-beclear-2.18.0-r43hc0ef7c4_1.tar.bz2 OSXArtifacts.zip Azure
showYou may also use conda to install after downloading and extracting the zip file. From the OSXArtifacts directory: conda install -c ./packages <package name>
osx-64 bioconductor-bus-1.58.0-r43hc0ef7c4_1.tar.bz2 OSXArtifacts.zip Azure
showYou may also use conda to install after downloading and extracting the zip file. From the OSXArtifacts directory: conda install -c ./packages <package name>
osx-64 bioconductor-edger-4.0.16-r43hc0ef7c4_1.tar.bz2 OSXArtifacts.zip Azure
showYou may also use conda to install after downloading and extracting the zip file. From the OSXArtifacts directory: conda install -c ./packages <package name>
osx-64 bioconductor-graph-1.80.0-r43h4c50009_1.tar.bz2 OSXArtifacts.zip Azure
showYou may also use conda to install after downloading and extracting the zip file. From the OSXArtifacts directory: conda install -c ./packages <package name>
osx-64 bioconductor-rhdf5filters-1.14.1-r43hc0ef7c4_1.tar.bz2 OSXArtifacts.zip Azure
showYou may also use conda to install after downloading and extracting the zip file. From the OSXArtifacts directory: conda install -c ./packages <package name>
osx-64 bioconductor-sparsematrixstats-1.14.0-r43hc0ef7c4_1.tar.bz2 OSXArtifacts.zip Azure
showYou may also use conda to install after downloading and extracting the zip file. From the OSXArtifacts directory: conda install -c ./packages <package name>
linux-aarch64 bioconductor-affyio-1.72.0-r43h1184a65_1.tar.bz2 repodata.json CircleCI
showYou may also use conda to install:conda install -c https://output.circle-artifacts.com/output/job/a8452f64-480d-4ad1-ab69-b201564c51f6/artifacts/0/tmp/artifacts/packages <package name>
linux-aarch64 bioconductor-beclear-2.18.0-r43h7d2ed04_1.tar.bz2 repodata.json CircleCI
showYou may also use conda to install:conda install -c https://output.circle-artifacts.com/output/job/a8452f64-480d-4ad1-ab69-b201564c51f6/artifacts/0/tmp/artifacts/packages <package name>
linux-aarch64 bioconductor-bus-1.58.0-r43h7d2ed04_1.tar.bz2 repodata.json CircleCI
showYou may also use conda to install:conda install -c https://output.circle-artifacts.com/output/job/a8452f64-480d-4ad1-ab69-b201564c51f6/artifacts/0/tmp/artifacts/packages <package name>
linux-aarch64 bioconductor-edger-4.0.16-r43h7d2ed04_1.tar.bz2 repodata.json CircleCI
showYou may also use conda to install:conda install -c https://output.circle-artifacts.com/output/job/a8452f64-480d-4ad1-ab69-b201564c51f6/artifacts/0/tmp/artifacts/packages <package name>
linux-aarch64 bioconductor-graph-1.80.0-r43h1184a65_1.tar.bz2 repodata.json CircleCI
showYou may also use conda to install:conda install -c https://output.circle-artifacts.com/output/job/a8452f64-480d-4ad1-ab69-b201564c51f6/artifacts/0/tmp/artifacts/packages <package name>
linux-aarch64 bioconductor-rhdf5filters-1.14.1-r43h7d2ed04_1.tar.bz2 repodata.json CircleCI
showYou may also use conda to install:conda install -c https://output.circle-artifacts.com/output/job/a8452f64-480d-4ad1-ab69-b201564c51f6/artifacts/0/tmp/artifacts/packages <package name>
linux-aarch64 bioconductor-sparsematrixstats-1.14.0-r43h7d2ed04_1.tar.bz2 repodata.json CircleCI
showYou may also use conda to install:conda install -c https://output.circle-artifacts.com/output/job/a8452f64-480d-4ad1-ab69-b201564c51f6/artifacts/0/tmp/artifacts/packages <package name>

Docker image(s) built:

Package Tag CI Install with docker
bioconductor-affyio 1.72.0--r43ha9d7317_1 Azure
showImages for Azure are in the LinuxArtifacts zip file above.gzip -dc LinuxArtifacts/images/bioconductor-affyio:1.72.0--r43ha9d7317_1.tar.gz | docker load
bioconductor-beclear 2.18.0--r43hf17093f_1 Azure
showImages for Azure are in the LinuxArtifacts zip file above.gzip -dc LinuxArtifacts/images/bioconductor-beclear:2.18.0--r43hf17093f_1.tar.gz | docker load
bioconductor-bus 1.58.0--r43hf17093f_1 Azure
showImages for Azure are in the LinuxArtifacts zip file above.gzip -dc LinuxArtifacts/images/bioconductor-bus:1.58.0--r43hf17093f_1.tar.gz | docker load
bioconductor-edger 4.0.16--r43hf17093f_1 Azure
showImages for Azure are in the LinuxArtifacts zip file above.gzip -dc LinuxArtifacts/images/bioconductor-edger:4.0.16--r43hf17093f_1.tar.gz | docker load
bioconductor-graph 1.80.0--r43ha9d7317_1 Azure
showImages for Azure are in the LinuxArtifacts zip file above.gzip -dc LinuxArtifacts/images/bioconductor-graph:1.80.0--r43ha9d7317_1.tar.gz | docker load
bioconductor-rhdf5filters 1.14.1--r43hf17093f_1 Azure
showImages for Azure are in the LinuxArtifacts zip file above.gzip -dc LinuxArtifacts/images/bioconductor-rhdf5filters:1.14.1--r43hf17093f_1.tar.gz | docker load
bioconductor-sparsematrixstats 1.14.0--r43hf17093f_1 Azure
showImages for Azure are in the LinuxArtifacts zip file above.gzip -dc LinuxArtifacts/images/bioconductor-sparsematrixstats:1.14.0--r43hf17093f_1.tar.gz | docker load

daler pushed a commit that referenced this pull request May 14, 2024
* Add Linux aarch64 build for more Bioconductor packages

- affyio
- beclear
- bus
- ebimage
- edger
- graph
- rhdf5filters
- sparsematrixstats

Signed-off-by: Martin Tzvetanov Grigorov <mgrigorov@apache.org>

* Do not build ebimage for now - it fails on OSX

Update edgeR to 4.0.16

Signed-off-by: Martin Tzvetanov Grigorov <mgrigorov@apache.org>

---------

Signed-off-by: Martin Tzvetanov Grigorov <mgrigorov@apache.org>
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3 participants