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Do not build ebimage for now - it fails on OSX
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Update edgeR to 4.0.16

Signed-off-by: Martin Tzvetanov Grigorov <mgrigorov@apache.org>
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martin-g committed May 7, 2024
1 parent 1b984c8 commit 7f1b26a
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Showing 2 changed files with 4 additions and 6 deletions.
6 changes: 2 additions & 4 deletions recipes/bioconductor-ebimage/meta.yaml
Original file line number Diff line number Diff line change
Expand Up @@ -13,7 +13,7 @@ source:
- 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
md5: 22e920a81ab633cdbf753daf3e128d64
build:
number: 1
number: 0
rpaths:
- lib/R/lib/
- lib/
Expand Down Expand Up @@ -55,13 +55,11 @@ test:
- '$R -e "library(''{{ name }}'')"'
about:
home: 'https://bioconductor.org/packages/{{ bioc }}/bioc/html/{{ name }}.html'
license: 'LGPL-3.0-only'
license: LGPL
summary: 'Image processing and analysis toolbox for R'
description: 'EBImage provides general purpose functionality for image processing and analysis. In the context of (high-throughput) microscopy-based cellular assays, EBImage offers tools to segment cells and extract quantitative cellular descriptors. This allows the automation of such tasks using the R programming language and facilitates the use of other tools in the R environment for signal processing, statistical modeling, machine learning and visualization with image data.'
license_file: '{{ environ["PREFIX"] }}/lib/R/share/licenses/LGPL-3'
extra:
additional-platforms:
- linux-aarch64
identifiers:
- biotools:ebimage
parent_recipe:
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4 changes: 2 additions & 2 deletions recipes/bioconductor-edger/meta.yaml
Original file line number Diff line number Diff line change
@@ -1,4 +1,4 @@
{% set version = "4.0.2" %}
{% set version = "4.0.16" %}
{% set name = "edgeR" %}
{% set bioc = "3.18" %}

Expand All @@ -11,7 +11,7 @@ source:
- 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz'
- 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
- 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
md5: 0ba48556be0c95b929db5bbed32923f3
md5: 8fb1c6c67e29d299c991d16d0f6c5f5b
build:
number: 1
rpaths:
Expand Down

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