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Develop/bug trim space and fix pair identifiers #10

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@sagun98 sagun98 commented Sep 16, 2020

Hi @ljmciver ,

Below are the changes in the pull request.

  • Change the input format to --input1 --input2 --unpaired
  • Trim the spaces in the identifiers sequences of the input files
  • Add the identifier sequence number if not present in the input files
  • Bowtie2 default options set to --very-sensitive-local

Can you please review it whenever you get a chance? I ll ping you on slack as well.

Thanks,
Sagun

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