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fix: memory usage in normalize command #31

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Jun 22, 2023
Merged

fix: memory usage in normalize command #31

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2 changes: 1 addition & 1 deletion clinvar_tsv/normalize.py
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Original file line number Diff line number Diff line change
Expand Up @@ -160,7 +160,7 @@ def normalize_tab_delimited_file(infile, outfile, reference_fasta, verbose=True)
# Reduce the progress bar refresh rate if we're not in a TTY
mininterval = 0.1 if sys.stdout.isatty() else 60
with tqdm.tqdm(unit="lines", mininterval=mininterval) as progress:
for line in infile.readlines():
for line in infile:
data = dict(zip(columns, line.strip("\n").split("\t")))
# fill the data with blanks for any missing data
for column in columns:
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