Data and code repository for the Open COVID-19 Data Working Group: a global and multi-organizational initative that aims to enable rapid sharing of trusted and open public health data to advance the response to infectious diseases.
We first want to thank all those individuals and organizations across the world who have been willing and able to report data in as open and timely manner as possible. This work attempts to synthesize information from across a myriad set of data sources. Each entry in our database has an associatd source. A number of individuals have contributed to the specific data added here and their names and details are listed below along with citations.
Please get in touch should you want to contribute line list data, have any questions or just want to say hi: pigottdm@uw.edu or moritz.kraemer@zoo.ox.ac.uk
We promote open collaboration among researchers and encourage users of these data make best efforts to collaborate with representatives of the groups that generated data and involve them in their analyses where appropriate. Please get in touch should you require more information.
Daily updates are usually processed by 10pm PT (1am EST, 6am GMT) and can be found the latest data folder.
A full description of the methodology used for this study can be found here: Xu, B., Gutierrez, B., Mekaru, S. et al. Epidemiological data from the COVID-19 outbreak, real-time case information. Sci Data 7, 106 (2020). https://doi.org/10.1038/s41597-020-0448-0
And a short summary of the data can be found here: Xu B, Kraemer MUG, Open COVID-19 Data Working Group. Open access epidemiological data from the COVID-19 outbreak. Lancet Infect Dis. 20(5):534 (2020). https://doi:10.1016/S1473-3099(20)30119-5
A dashboard showing the data can be viewed here: https://www.healthmap.org/covid-19/
Co-morbidity data may facilitate CFR estimation processes
Datasets derived from Global Burden of Disease on prevalence rates of known co-morbidities, including Diabetes mellitus, Cardiovascular Disease, and Chronic Obstructive Pulmonary Disorder. For more information on these estimates please see metadata and https://vizhub.healthdata.org/gbd-compare/
Global demographics, with age and sex structure are provided. These are mirrors of estimates from the Global Burden of Disease 2017, publically available here - http://ghdx.healthdata.org/record/ihme-data/gbd-2017-population-estimates-1950-2017. For further information please consult https://www.thelancet.com/journals/lancet/article/PIIS0140-6736(18)32278-5/fulltext
We want to specifically thank the different regional working groups, including the Africa Open COVID-19 Data Working Group (https://github.com/dsfsi/covid19africa) and LATAM Open COVID-19 Data Working Group.
A list of curators and contributors to the Open COVID-19 Data Working Group is provided below:
| Name | Github | ||
|---|---|---|---|
| Abdullahi Kawu | abdullahikawu | ||
| Albert Doughan | adoughan1 | ||
| Alex Benjamin | axmb | alexbenjamin@google.com | |
| Alexander Zabreski | aezarebski@gmail.com | ||
| Allyson Pemberton | allysonjp715 | allysonjp@google.com | |
| Alyssa Loskill | aloskill@bu.edu | ||
| Amanuel Getachew | amanbk12 | ||
| Anastasia Lambrou | @anasophlambrou | anastasia.lambrou@jhu.edu | |
| Andrew Auruku | aurukua | ||
| Anya Nyman | anya-nyman | ||
| Arianna Maever Amit | alamit@up.edu.ph | ||
| Bernardo Gutierrez | @B_Gutierrez_G | BernardoGG | bernardo.gutierrez@zoo.ox.ac.uk |
| Bo Xu | @BoXu55686629 | BoXu123 | xu-b15@mails.tsinghua.edu.cn |
| Carel Nchachi | Carel08 | ||
| Carl Britto | carl.britto@paediatrics.ox.ac.uk | ||
| Carrie | |||
| Daniel Omolo | Jomo20 | ||
| Darlan Candido | @candido_darlan | darlan.dasilvacandido@merton.ox.ac.uk | |
| David Pigott | @davidmpigott | pigottdm@uw.edu | |
| Devon Jarvis | JarvisDevon | ||
| Diane Igoche | deelearn | ||
| Dieudonné Niyitanga | dniyitanga | ||
| Elaine Nsoesie | onelaine@bu.edu | ||
| Enrique Estigarribia | enrique-estigarribia@hotmail.com | ||
| Ernest Offiong | ernoff | ||
| Flavia Salles | flacrissalles@gmail.com | ||
| Harvey Davis | harvey.davis@gtc.ox.ac.uk | ||
| Herkulaas Combrink | MikeMcMalace | ||
| Ian Gregorio-de Souza | |||
| Idris Oladele Muniru | idrismunir15 | ||
| Isha Berry | @ishaberry2 | isha.berry@mail.utoronto.ca | |
| Ismaël Koné | iskode | ||
| James Azam | jamesmbaazam | ||
| Jean Paul Carrera | @JeanCarrPaul | jean.carrera@lincoln.ox.ac.uk | |
| Jeanet Morienyane | |||
| Jenny MG Shelton | j.shelton@imperial.ac.uk | ||
| Jessie Wu | jessiewu | chiehhsi.wu@gmail.com | |
| John Brownstein | |||
| Jose Martinez | zegmartinezch@gmail.com | ||
| Juan Pablo Cordova | jpablo20048@gmail.com | ||
| Julia Morgan | morgaj5@uw.edu | ||
| Kamorudeen Amuda | akindele2012 | ||
| Kara Sewalk | @kara_sewalk | Kara.Sewalk@childrens.harvard.edu | |
| Karen Santiago | @itzelmardesiche | santiagomardesichekaren@gmail.com | |
| Kate LeGrand | klegrand15 | kel15@uw.edu | |
| Kazeem Hakeem | hakymulla | ||
| Kelly Moran | khmoran | khmoran@google.com | |
| Kernie Obimakinde | dakrownie | kernie@google.com | |
| Kundai Gwatidzo | epicpewpew | ||
| Lauren Goodwin | lauren.goodwin@childrens.harvard.edu | ||
| Leslie Leland | leslieleland | lesliele@google.com | |
| Lin Wang | @fdlwang | lin.wang@pasteur.fr | |
| Liz Hurley | elizabeth.hurley@childrens.harvard.edu | ||
| Lizel Greyling | lizelgreyling | ||
| Lucy Matkin | lucy.matkin@zoo.ox.ac.uk | ||
| Mahamat Hamdan | axmat | ||
| Mahlet Konjit-Solomon | mahlet.nigatu@gmail.com | ||
| Manoli Heyneke | hey-mano | ||
| Manu Cornet | Imanul | manucomet@google.com | |
| Manuel Muvhango | ManuelMuvhango | ||
| Marcos | |||
| Marcos Antonio Escurra | marcos1996escurra@gmail.com | ||
| Marcos Escurra | marcos1996escurra@gmail.com | ||
| Maria Mercedes Cobo | @meche_cobo | maria.cobo@paediatrics.ox.ac.uk | |
| Marie Orschulik | morschulik | ||
| Million Abayneh | millzon | ||
| Modupe Coker | moyegunle | ||
| Molly Godfrey | molly.d.godfrey@gmail.com | ||
| Moritz Kraemer | @mougk | mougk | moritz.kraemer@zoo.ox.ac.uk |
| Moseli Motsoehli | |||
| Moses Ronoh | moses1065 | ||
| Mostafa El Habib Daho | Mostafa-EHD | ||
| Nuno Faria | @nmrfaria | nuno.faria@zoo.ox.ac.uk | |
| Olaniyan Oluwasegun | Segun12 | ||
| Oliver G Pybus | @EvolveDotZoo | oliver.pybus@zoo.ox.ac.uk | |
| Omara Patrick | |||
| Onesimo Mtintsilana | oniemtie | ||
| Pablo Reyes | preyesa19@gmail.com | ||
| Pamela Andrade | pamelandrade22@gmail.com | ||
| Raul Aveiro | @Raulaveiro | raul.aveiro45@gmail.com | |
| Rebecca Cogen | cogenr@uw.edu | ||
| Sabrina Li | @sabrinalyli | sabrina.li@ouce.ox.ac.uk | |
| Sam Ewald | sewald01 | ewalds2@uw.edu | |
| Sam Scarpino | @svscarpino | s.scarpino@northeastern.edu | |
| Sang Woo Park | @sang_woo_park | parksw3 | swp2@princeton.edu |
| Sarah Hill | @Hill_SarahC | sarah.hill@zoo.ox.ac.uk | |
| Sheriffo Ceesay | sneceesay77 | ||
| Shingirai Pfumayaramba | shingiraip | ||
| Shivanand Guness | shivam11 | ||
| Stefanie Watson | stefanieaw | watsonsa@uw.edu | |
| Stephen Radcliffe | sratcliffe118 | sratcliffe@google.com | |
| Steve Bachmeier | stevebachmeier | sbachmei@uw.edu | |
| Sumiko Mekaru | @Sumiko_Mekaru | Sumiko.Mekaru@childrens.harvard.edu | |
| Tahir | tahirlanre | ||
| Thomas Brewer | Thomas.Brewer@childrens.harvard.edu | ||
| Thomas Rawson | thomas.rawson@pmb.ox.ac.uk | ||
| Timothé Faudot | attwad | timothe@google.com | |
| Tsige Gebreslasse | |||
| Veincent Pepito | vpepito@ateneo.edu | ||
| Vongani Maluleke | Von31 | ||
| Vukosi Marivate | vukosi.marivate@cs.up.ac.za | ||
| Willard Zvarevashe wzvarevashe | |||
| Yaset Caicedo | @yaset_caicedo | eyaset@gmail.com | |
| Zakia Salod | ZakiaSalod | ||
| Zamasomi Luvuno | |||
| Zoë Willis | znw23@hotmail.co.uk |
In order to cite the current version of the dataset please use the citation below. As the data are updated regularly, please update the retrieval date in the howpublished field.
@misc{kraemer2020epidemiological,
author = {Open COVID-19 Data Working Group},
title = {{Detailed Epidemiological Data from the COVID-19 Outbreak}},
howpublished = {Accessed on yyyy-mm-dd from
\url{http://virological.org/t/epidemiological-data-from-the-ncov-2019-outbreak-early-descriptions-from-publicly-available-data/337}},
year = 2020
}
and
In order to cite the original dataset and methodology of how it was collected please use:
@article{xu2020Epidemiological,
author = {Xu, Bo and Gutierrez, Bernardo and Mekaru, Sumiko and Sewalk, Kara and Goodwin, Lauren and Loskill, Alyssa and Cohn, Emily and Hswen, Yulin and Hill, Sarah C. and Cobo, Maria M and Zarebski, Alexander and Li, Sabrina and Wu, Chieh-Hsi and Hulland, Erin and Morgan, Julia and Wang, Lin and O'Brien, Katelynn and Scarpino, Samuel V. and Brownstein, John S. and Pybus, Oliver G. and Pigott, David M. and Kraemer, Moritz U. G.},
doi = {doi.org/10.1038/s41597-020-0448-0},
journal = {Scientific Data},
number = {106},
title = {{Epidemiological data from the COVID-19 outbreak, real-time case information}},
volume = {7},
year = {2020}
}
