Notes on programming, bioinformatics, and other technical subjects.
Languages
Programming environments
Bioinformatics
- Nomenclature
- File types
- Common Databases
- Statistical models for genomics
- Analyses
- Programs
- HOMER
- HTSlib, including samtools and bcftools
- kallisto/sleuth
- MEME
- Pipeline tools, such as snakemake
- Genome browsers, such as IGV
- Mass spectrometry software, file formats, and databases
- Other tools, including online services
Experimental biology
Other