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sciReptor - single-cell immunoglobulin repertoire analysis toolkit

You will find the current development repository here: https://gitlab.hzdr.de/scireptor

Name		Name	Last commit message	Last commit date
Latest commit History 101 Commits
lib		lib
metainfo		metainfo
tools		tools
INSTALLATION.md		INSTALLATION.md
LICENSE		LICENSE
Makefile		Makefile
Makefile.install		Makefile.install
Makefile.sanger		Makefile.sanger
README.md		README.md
bcelldb_init.pm		bcelldb_init.pm
bcelldb_init.py		bcelldb_init.py
config		config
correct_tagconfusion.pm		correct_tagconfusion.pm
create_spatials.py		create_spatials.py
create_spatials_tcr.py		create_spatials_tcr.py
fromdb_consensus_fasta.pl		fromdb_consensus_fasta.pl
fromdb_fasta.pl		fromdb_fasta.pl
igdb_project.sql		igdb_project.sql
mutation_matrix.pl		mutation_matrix.pl
perform_RazerS.pl		perform_RazerS.pl
perform_blast.sh		perform_blast.sh
perform_igblast.sh		perform_igblast.sh
perform_muscle.pl		perform_muscle.pl
pipeline_QC.R		pipeline_QC.R
pipeline_start.sh		pipeline_start.sh
pipeline_status.sh		pipeline_status.sh
pre-flight.sh		pre-flight.sh
test_db_connection.pl		test_db_connection.pl
test_shakedown.sh		test_shakedown.sh
todb_CDR_FWR.pl		todb_CDR_FWR.pl
todb_VDJ.pl		todb_VDJ.pl
todb_consensus_sequences.pl		todb_consensus_sequences.pl
todb_consensus_tags.pl		todb_consensus_tags.pl
todb_constant.pl		todb_constant.pl
todb_flow.R		todb_flow.R
todb_igblast_align.pl		todb_igblast_align.pl
todb_mutations_from_align.pl		todb_mutations_from_align.pl
todb_reads.pl		todb_reads.pl
todb_sampleinfo_highth.pl		todb_sampleinfo_highth.pl
todb_sampleinfo_sanger.pl		todb_sampleinfo_sanger.pl
todb_sequences_sanger.pl		todb_sequences_sanger.pl
todb_tags.pl		todb_tags.pl