Smith-Waterman-algorithm-java-implementation

BioMultithreading

To run the algorithm in a multi-thread fashion. The more CPU cores, the faster it gets.

BioSequential

To run the algorithm in a sequential fashion. Only requires 1 CPU core.

input_Data

Real input data examples.

How to run the program

Check this document for instruction of how to run both programs and use the input data.

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If there are any questions. please do not hesistate to ask. Thank you.