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150 Open 285 Closed
150 Open 285 Closed
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Issues list

[napari plugin] Display better information in case there is an error
#802 opened May 12, 2024 by Stoyan-I-A
@Stoyan-I-A
Add MODEL CARDS (list of all models + detailed description)
#799 opened Apr 19, 2024 by hermancollin
Refactor CLI options for nnunet
#798 opened Apr 19, 2024 by hermancollin
Adapt download_model script to fetch release assets
#797 opened Apr 3, 2024 by hermancollin
1
Fresh git clone is ~150MB due to large files in git history
#793 opened Mar 11, 2024 by joshuacwnewton
8
Add GUI gif in README documentation category: the change is documentation related to AxonDeepSeg GUI readme context: the changes in the readme file
#791 opened Mar 1, 2024 by hermancollin
@hermancollin
3
Unused data on OSF
#787 opened Feb 12, 2024 by hermancollin
Axon Discrimination for QC
#786 opened Feb 12, 2024 by hermancollin
Segment nerve section to compute axon density feature category: the change introduces a new functionality to AxonDeepSeg good internship project models context morphometrics related to morphometrics script nnunetv2 priority:HIGH processing context: pre- or post-processing training context
#782 opened Jan 15, 2024 by hermancollin
2
Output morphometric file and histogram PNGs of key metrics (eg axon diameter, myelin thickness, g-ratio) with every segmentation run.
#779 opened Jan 9, 2024 by mathieuboudreau
Morphometrics computation for perimeter doesn't reflect outermost perimeter bug category: the change fixes a error in the code enhancement category: the change expands an existing functionality or refactoring morphometrics related to morphometrics script
#776 opened Dec 3, 2023 by hermancollin
8
Add support for nnunetv2 models dependencies Pull requests that update a dependency file feature category: the change introduces a new functionality to AxonDeepSeg models context nnunetv2
#765 opened Oct 26, 2023 by hermancollin
1
1
Add Quality Assurance features good internship project
#760 opened Oct 13, 2023 by mathieuboudreau
3 tasks
3
Create testimonials page feature category: the change introduces a new functionality to AxonDeepSeg
#759 opened Sep 29, 2023 by jcohenadad
7 of 8 tasks
13
Build fails due to onnxruntime update
#757 opened Sep 25, 2023 by mathieuboudreau
Sciatic nerve toluidine blue image analysis on AxonDeepSeg
#754 opened Aug 17, 2023 by apuer11
7
How to change pixel size in napari GUI
#747 opened Jun 21, 2023 by hermancollin
3
Error trying to train models "raise source.error("bad escape %s" % escape, len(escape)) re.error: bad escape \m at position 10"
#743 opened Jun 2, 2023 by GrimmSnark
2
16 bit tifs not converted properly to 8 bit when images are loaded
#737 opened Apr 21, 2023 by mathieuboudreau
@mathieuboudreau
14
Add tooltips to Napari buttons
#731 opened Mar 24, 2023 by mathieuboudreau
Consider moving the config.py file inside the AxonDeepSeg directory.
#724 opened Feb 17, 2023 by Stoyan-I-A
Train dataset with MONAI & compare segmentations with IVADOMED good first issue Issues that new contributors can easily work on priority:HIGH training context
#722 opened Feb 7, 2023 by mathieuboudreau
Wiki cleanup documentation category: the change is documentation related to AxonDeepSeg priority:LOW
#715 opened Jan 20, 2023 by hermancollin
1
RAM limitations with no-patch option discussion enhancement category: the change expands an existing functionality or refactoring
#703 opened Dec 21, 2022 by mariehbourget
Idea: stop supporting combined axon-myelin images and switch to only separate
#702 opened Dec 9, 2022 by mathieuboudreau
3
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