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186 Open 142 Closed
186 Open 142 Closed
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Issues list

windows for lumpyexpress
#397 opened May 16, 2024 by licongge
run lumpy without speedseq
#396 opened May 7, 2024 by RafigaM
Makefile - update BamTools to compile
#395 opened Mar 18, 2024 by DavidStreid
Input BAM file not found
#394 opened Feb 21, 2024 by espelpz
Missing pair end parameters:bamfile, histo_file, mean, stdev, read_length, min_non_overlap, discordant_z
#393 opened Feb 8, 2024 by psardana22
Lumpyexpress produces zero INS and CNV
#392 opened Jul 4, 2023 by changhan1110
1
Error reporting about 'make'
#391 opened Feb 21, 2023 by zhaobinkai
2
lumpy ::claimsto be version (v 0.2.13)
#390 opened Jan 29, 2023 by EricDeveaud
Can't find first and/or second of pair in sam block of length 2
#389 opened Jan 18, 2023 by jonahcullen
ERROR in lumpyexpress -n: command not found; [: ==: unary operator expected
#388 opened Jan 7, 2023 by ClarenceHsiang
5
File "/ME/alignment/lumpy-sv//scripts/bamkit/bamlibs.py", line 61 print ','.join(lib_rg[lib]) ^ SyntaxError: invalid syntax
#387 opened Nov 10, 2022 by 1580542426
1
[E::idx_find_and_load] Could not retrieve index file for '-'
#386 opened Oct 7, 2022 by liujiaxin7
1
about out file
#385 opened Sep 15, 2022 by linshengnan09
make compile error
#384 opened Sep 8, 2022 by sjads
5
parameter required for mean
#383 opened Jul 15, 2022 by J-Bradlee
lumpy returns more than expected variants
#382 opened Jul 1, 2022 by anoronh4
BAM files must be coordinate sorted
#381 opened Jun 29, 2022 by gneedle1
1
Error: -B is required
#379 opened May 24, 2022 by khalidanaveed
some errors when do "make"
#378 opened Apr 5, 2022 by gaom001
1
LUMPY SV caller on Low coverage WGS
#376 opened Feb 18, 2022 by felipeluz97
Output BAM with tags to associate reads back to SV calls?
#373 opened Jan 28, 2022 by nh13
1
Lumpy applicability
#372 opened Dec 14, 2021 by anleopa
3
[E]lumpy-filter,error running command: set -eu;
#371 opened Dec 3, 2021 by anxuan-web
2
lumpyexpress exited with "Could not retrieve index file for '-'"
#370 opened Nov 28, 2021 by Ceonham
5
bam from samtools view -F 1294 is larger than bam from speedseq or
#369 opened Nov 22, 2021 by liuhankui
3
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