mlst_Sagalactiae

Algorithm like Capsular Typing Method for Streptococcus agalactiae Using Whole Genome Sequence Data. doi: 10.1128/JCM.03142-15 Blastn: evalue 1e-100; 95% of identity; 90% of sequence length.

To configure:

1. Run ./mlst_Sagalactiae -makedb

To use:

1. Run ./mlst_Sagalactiae file [-nv]

Pre-requeriments:

1. NCBI-Blast+ Stand alone (makeblastdb and blastn): ftp://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/LATEST/

2. awk