edit starting sequence in notebook

aqlaboratory · Feb 7, 2024 · 111704b · 111704b
1 parent 8234d68
commit 111704b
Showing 1 changed file with 9 additions and 20 deletions.
diff --git a/notebooks/OpenFold.ipynb b/notebooks/OpenFold.ipynb
@@ -49,27 +49,15 @@
     },
     {
       "cell_type": "code",
-      "execution_count": 1,
+      "execution_count": null,
       "metadata": {
-        "id": "rowN0bVYLe9n",
-        "colab": {
-          "base_uri": "https://localhost:8080/"
-        },
-        "outputId": "8a4c9c7d-a555-460f-de39-d6aff2272d36"
+        "id": "rowN0bVYLe9n"
       },
-      "outputs": [
-        {
-          "output_type": "stream",
-          "name": "stdout",
-          "text": [
-            "Length of input sequence : 716\n"
-          ]
-        }
-      ],
+      "outputs": [],
       "source": [
         "#@markdown ### Enter the amino acid sequence to fold ⬇️\n",
         "#@markdown For multiple sequences, separate sequences with a colon `:`\n",
-        "input_sequence = 'MVDATRVPMDERFRTLKKKLEEGMVFTEYEQIPKKKANGIFSTAALPENAERSRIREVVPYEENRVELIPTKENNTGYINASHIKVVVGGAEWHYIATQGPLPHTCHDFWQMVWEQGVNVIAMVTAEEEGGRTKSHRYWPKLGSKHSSATYGKFKVTTKFRTDSVCYATTGLKVKHLLSGQERTVWHLQYTDWPDHGCPEDVQGFLSYLEEIQSVRRHTNSMLEGTKNRHPPIVVHCSAGVGRTGVLILSELMIYCLEHNEKVEVPMMLRLLREQRMFMIQTIAQYKFVYQVLIQFLQNSRLI:MVDATRVPMDERFRTLKKKLEEGMVFTEYEQIPKKKANGIFSTAALPENAERSRIREVVPYEENRVELIPTKENNTGYINASHIKVVVGGAEWHYIATQGPLPHTCHDFWQMVWEQGVNVIAMVTAEEEGGRTKSHRYWPKLGSKHSSATYGKFKVTTKFRTDSVCYATTGLKVKHLLSGQERTVWHLQYTDWPDHGCPEDVQGFLSYLEEIQSVRRHTNSMLEGTKNRHPPIVVHCSAGVGRTGVLILSELMIYCLEHNEKVEVPMMLRLLREQRMFMIQTIAQYKFVYQVLIQFLQNSRLI:GHMAEPQRHTMLCMCCKCEARIELVVESSADDLRAFQQLFLNTLSFVCPWCASQQ:GHMAEPQRHTMLCMCCKCEARIELVVESSADDLRAFQQLFLNTLSFVCPWCASQQ'  #@param {type:\"string\"}\n",
+        "input_sequence = 'MKLKQVADKLEEVASKLYHNANELARVAKLLGER:MKLKQVADKLEEVASKLYHNANELARVAKLLGER: MKLKQVADKLEEVASKLYHNANELARVAKLLGER:MKLKQVADKLEEVASKLYHNANELARVAKLLGER'  #@param {type:\"string\"}\n",
         "\n",
         "#@markdown ### Configure the model ⬇️\n",
         "\n",
@@ -107,7 +95,7 @@
     },
     {
       "cell_type": "code",
-      "execution_count": 2,
+      "execution_count": null,
       "metadata": {
         "id": "woIxeCPygt7K"
       },
@@ -159,7 +147,7 @@
     },
     {
       "cell_type": "code",
-      "execution_count": 3,
+      "execution_count": null,
       "metadata": {
         "id": "VzJ5iMjTtoZw"
       },
@@ -208,7 +196,7 @@
     },
     {
       "cell_type": "code",
-      "execution_count": 4,
+      "execution_count": null,
       "metadata": {
         "id": "_FpxxMo-mvcP"
       },
@@ -914,7 +902,8 @@
   "metadata": {
     "colab": {
       "provenance": [],
-      "gpuType": "T4"
+      "gpuType": "T4",
+      "toc_visible": true
     },
     "kernelspec": {
       "display_name": "Python 3",