MISA++: A standardized interface for automated bioimage analysis

doi.org/10.1016/j.softx.2020.100405

Ruman Gerst (1,2), Anna Medyukhina (1), Marc Thilo Figge(1,2,*)

(1) Applied Systems Biology, Leibniz Institute for Natural Product Research and Infection Biology - Hans-Knöll-Institute, Jena, Germany

(2) Faculty of Biological Sciences, Friedrich-Schiller-University Jena, Germany

* To whom correspondence should be addressed.

https://applied-systems-biology.github.io/misa-framework/

About

This repository contains the MISA++ framework website and binary downloads. The subfolder "src" contains all source codes associated to the publication. The subfolder "docs" contains the website, including documentation as HTML site.

Copyright

Copyright by Ruman Gerst

Research Group Applied Systems Biology - Head: Prof. Dr. Marc Thilo Figge

https://www.leibniz-hki.de/en/applied-systems-biology.html

HKI-Center for Systems Biology of Infection

Leibniz Institute for Natural Product Research and Infection Biology - Hans Knöll Insitute (HKI)

Adolf-Reichwein-Straße 23, 07745 Jena, Germany

The project code is licensed under BSD 2-Clause. See the LICENSE file provided with the code for the full license.

Editing the website

The website is built using Hugo that builds the final website into the docs folder. Use following command to obtain the website source:

git clone https://github.com/applied-systems-biology/misa-framework.git
git submodule init
git submodule update

To preview the website during development, run following command:

hugo server

To generate the final website, run following command:

hugo