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29 Open 26 Closed
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Issues list

User-provided file path for reference database/classifier
#126 opened Apr 26, 2024 by lukenoaa
Tourmaline 2.0 mega-issue
#125 opened Apr 23, 2024 by lukenoaa
Add rescript qiime plugin to Tourmaline Docker
#124 opened Apr 11, 2024 by ksilnoaa
Check for metadata beta_group_column prior to diversity step, not at beginning
#123 opened Mar 26, 2024 by ksilnoaa
config.yaml updates
#122 opened Mar 18, 2024 by lukenoaa
Syntax warning for invalid escape sequences bug Something isn't working
#121 opened Mar 6, 2024 by lukenoaa
Delete _config.yaml (not being used)
#120 opened Mar 5, 2024 by lukenoaa
Check comments/instructions about filtering
#119 opened Mar 5, 2024 by lukenoaa
Documentation updates
#118 opened Feb 5, 2024 by lukenoaa
Add code guidance to export outputs to phyloseq
#116 opened Nov 15, 2023 by ksilnoaa
Make the diversity step optional enhancement New feature or request
#115 opened Nov 15, 2023 by ksilnoaa
Update qiime2 osx/linux install instructions
#114 opened Oct 25, 2023 by ksilnoaa
Generate taxonomy information that is separated by taxonomic rank
#113 opened Sep 13, 2023 by ksilnoaa
@ksilnoaa
Relate config file with AOML-MIMARKS metadata terms enhancement New feature or request
#112 opened Sep 12, 2023 by ksilnoaa
Update init from existing repo script
#111 opened Aug 22, 2023 by ksilnoaa
Calculate MD5 checksums of sequences and compare to DADA2/Deblur seqids enhancement New feature or request
#97 opened Mar 15, 2023 by lukenoaa
Feature metadata: Add Genbank best hit (MegaBLAST vs. nt) enhancement New feature or request
#96 opened Mar 15, 2023 by lukenoaa
Feature metadata: add percent GC enhancement New feature or request
#95 opened Mar 15, 2023 by lukenoaa
Add support for fragment insertion tree enhancement New feature or request
#94 opened Mar 15, 2023 by lukenoaa
Travis, dependencies, and continuous integration tests (not unit tests) enhancement New feature or request
#93 opened Mar 15, 2023 by lukenoaa
Upload curated versions of reference databases to Zenodo enhancement New feature or request
#92 opened Mar 15, 2023 by lukenoaa
1
Report: add how taxonomy was generated enhancement New feature or request
#91 opened Mar 15, 2023 by lukenoaa
2
Add utility scrips to check that primers/adapters removed enhancement New feature or request
#90 opened Mar 15, 2023 by lukenoaa
2
Create Singularity container enhancement New feature or request
#87 opened Mar 15, 2023 by lukenoaa
Provide conda environments as YAML files enhancement New feature or request
#86 opened Mar 15, 2023 by lukenoaa
@rckarns8
1
ProTip! Updated in the last three days: updated:>2024-06-08.