Tools for functional network analysis (follow links for references):
-
netresponse discover context-specific activation patterns in interaction networks
-
Interaction Component Model ICMg to discover network modules. Can be supervised by functional information of the network.
For installation and usage, check the tutorial page.
You are welcome to:
- submit suggestions and bug reports
- send a pull request
- ping antagomir at IRCnet or FreeNode
Maintainer: Leo Lahti
Contributors: Olli-Pekka Huovilainen, Antonio Gusmao, Juuso Parkkinen
Acknowledgements: This program is partially based on the AIVGA Agglomerative Independent Variable Group Analysis source code (v. 1.0) Copyright (C) 2001-2007 Esa Alhoniemi, Antti Honkela, Krista Lagus, Jeremias Seppa, Harri Valpola, and Paul Wagner.
Matlab implementation is also available but not supported.