GitHub - amatov/NeurodegenerationMitochondriaLysosomes

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Name		Name	Last commit message	Last commit date
Latest commit History 36 Commits
AxonMask.tiff		AxonMask.tiff
CMT_axonalTransport_Plate5.R		CMT_axonalTransport_Plate5.R
CMT_track5.m		CMT_track5.m
Dimos CMT iPSc.pdf		Dimos CMT iPSc.pdf
DmitriSets.m		DmitriSets.m
DmitriSets2.m		DmitriSets2.m
DmitriSets3.m		DmitriSets3.m
DmitriSets5.m		DmitriSets5.m
Kymograph.tiff		Kymograph.tiff
MatovAxonMitochondria.r		MatovAxonMitochondria.r
MatovIperian.r		MatovIperian.r
MatovMitochondriaAxonDec14_2011.pdf		MatovMitochondriaAxonDec14_2011.pdf
MatovParkinsonsLysosomesLongTracksAstrocyte.avi		MatovParkinsonsLysosomesLongTracksAstrocyte.avi
MitoSize_Update01.pdf		MitoSize_Update01.pdf
MitochondriaAxonTracking_79363_7007.pdf		MitochondriaAxonTracking_79363_7007.pdf
MotionFigs1.pdf		MotionFigs1.pdf
README.md		README.md
ScaleSpaceDetectionMitochondriaAxon.png		ScaleSpaceDetectionMitochondriaAxon.png
adaptivethresh.m		adaptivethresh.m
all_tracks.tiff		all_tracks.tiff
avgV_VHL_analysis_V13.R		avgV_VHL_analysis_V13.R
awt.m		awt.m
axon_trace.tiff		axon_trace.tiff
bfopen.m		bfopen.m
blur.m		blur.m
bpass.m		bpass.m
bwconvexhull.m		bwconvexhull.m
bytscl.m		bytscl.m
curve2mask.m		curve2mask.m
curve2mask1.m		curve2mask1.m
cwatershed.m		cwatershed.m
cwatershed1.m		cwatershed1.m
despeckle.m		despeckle.m
distance2curve.m		distance2curve.m
distanceCellEdge.m		distanceCellEdge.m
dn2tif.m		dn2tif.m
filter124.m		filter124.m
filtfilt.m		filtfilt.m
find_outliers.m		find_outliers.m
getkey.m		getkey.m
gm_areaclose.m		gm_areaclose.m
gm_areaopen.m		gm_areaopen.m
gm_asf.m		gm_asf.m
gm_cdil.m		gm_cdil.m
gm_closeth.m		gm_closeth.m
gm_gradm.m		gm_gradm.m
gm_infrec.m		gm_infrec.m
gm_intersec.m		gm_intersec.m
gm_minimum.m		gm_minimum.m
gm_obr.m		gm_obr.m
gm_obrcbr.m		gm_obrcbr.m
gm_openrec.m		gm_openrec.m
gm_openrecth.m		gm_openrecth.m
gm_openth.m		gm_openth.m
gm_smooth.m		gm_smooth.m
gm_subm.m		gm_subm.m
gm_threshad.m		gm_threshad.m
gm_union.m		gm_union.m
hessianeigs.asv		hessianeigs.asv
hessianeigs.m		hessianeigs.m
hysthresh.m		hysthresh.m
imoverlay.m		imoverlay.m
imscroll.m		imscroll.m
imscroll1.m		imscroll1.m
initTrackingParams.m		initTrackingParams.m
lentrk.m		lentrk.m
localAvgStd2D.m		localAvgStd2D.m
locate_axon.m		locate_axon.m
locate_axon1.m		locate_axon1.m
locmax2d.m		locmax2d.m
meij_hessianeigs.m		meij_hessianeigs.m
minmax.m		minmax.m
neu_bwthin.m		neu_bwthin.m
neu_fjunc.m		neu_fjunc.m
neu_rmbranch.m		neu_rmbranch.m
neu_rmedge.m		neu_rmedge.m
neu_segmcombine.m		neu_segmcombine.m
neu_skellen.m		neu_skellen.m
nonmaxsuppts.m		nonmaxsuppts.m
normalise.m		normalise.m
overlay.m		overlay.m
preprAxon.m		preprAxon.m
regiongrow.m		regiongrow.m
regiongrowing.m		regiongrowing.m
regions_grow2.m		regions_grow2.m
rgb.m		rgb.m
select_axon.m		select_axon.m
select_axon1.m		select_axon1.m
set1edge_spline.mat		set1edge_spline.mat
set1normal_matrix.mat		set1normal_matrix.mat
set1pixel_edge.mat		set1pixel_edge.mat
set2edge_spline.mat		set2edge_spline.mat
set2normal_matrix.mat		set2normal_matrix.mat
set2pixel_edge.mat		set2pixel_edge.mat
spotDetector.m		spotDetector.m
thglobal_yen.m		thglobal_yen.m
tofloat.m		tofloat.m
toggle.m		toggle.m
top5.m		top5.m
track.m		track.m

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Matlab and R code for the motion and morphology analysis of mitochondria in axonal induced pluripotent stem cells obtained from the skin of Alzheimer's patients and lysosomes in Parkinson's astrocytes by Dmitri Volfson (iPierian/Pfizer) and Alexandre Matov

amatov/NeurodegenerationMitochondriaLysosomes

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