v0.7.0

Added

• smartstring feature for using the smartstring crate to reduce heap allocations.

Changed

• Reduce default sleep duration to reduce strain on CPU.
• Update quick-xml dependency to v0.30.0.
• Use a dedicated producer thread to read data from the reader in ThreadedParser.

Fixed

• Broken extraction of names in Citation::from_xml

Removed

• Unused fnv dependency.
• Deprecated uniprot::parse top-level function.

v0.6.0

Removed

• Deprecated CalciumBindingRegion, MetalIonBindingSite and NucleotidePhosphateBindingRegion variants of uniprot::FeatureType.

Added

• uniprot::Ligand and uniprot::LigandPart structs for the ligand and ligand_part attributes of uniprot::Feature.

Changed

• Updated URLs in documentation examples to use the new Uniprot REST API.
• Moved the uniref::parse_entry example to uniref::parse since single-entry requests to UniRef don't return single entries anymore.

v0.5.2

Added

• PartialEq, Eq, Hash and Clone traits to simple enum types (like uniprot::uniprot::FeatureType).

Changed

• Feature gate the url crate dependency to skip parsing links into url::Url if not needed.
• Remove dependency on thiserror by manually implementing std::error::Error where needed.

0.5.1

Fixed

• Large test files being included in distributed crates.io source package.

0.5.0

Added

• parse_entry functions to parse a single UniProt, UniParc or UniRef entry.

Fixed

• Parsing of creation dates with a defined timezone (e.g. 2021-01-11Z).

0.4.0

Added

• uniprot::uniref module to parse UniRef XML files.
• uniprot::uniparc module to parse UniParc XML files.

Changed

• Moved types to parse UniProt XML files to the uniprot::uniprot module.

Fixed

• Parsers now check the name of the root element before starting to parse the entries.

0.3.1

Changed

• lazy_static and num_cpus are only required ot build with threading feature.
• Slightly improved performance of ThreadedParser.

0.3.0

Added

• ThreadedParser::with_threads constructor to control the number of threads to spawn when parsing

Changed

• ThreadedParser does not required the reader to be Send + 'static anymore.

0.2.0

Added

• Implemented multithreading parser using crossbeam-channel, which can be removed by disabling the threading feature.
• Improved documentation of ::error and ::parser modules.

Fixed

• Missing implementation of submittedName deserialization within protein entries that crashed on TrEMBL.

0.1.1

Changed

• Removed remaining explicit panic! calls.

Added

• FromStr implementation for some enum types that are read from XML attributes.