Skip to content

MSM model of SH2-phosphoprotein cancer networks

Notifications You must be signed in to change notification settings

alquraishi/sh2-cancer

 
 

Folders and files

NameName
Last commit message
Last commit date

Latest commit

 

History

36 Commits
 
 
 
 
 
 
 
 

Repository files navigation

sh2-cancer

MSM model of SH2-phosphoprotein cancer networks

This repository contains source code (written in the Wolfram Language and R) for training the MSM family of models and making predictions. To get started, unpack repository in a directory of your choosing and then open one of the supplied Mathematica notebooks. The notebook instructions include information on customizing your installation.

  • learning.nb: This notebook walks through training the MSM/D model from raw binding data.
  • prediction.nb: This notebook walks through making predictions using the MSM/P and MSM/N models for human SH2 signaling.
  • visualization.nb: This notebook walks through visualization of the wild type and cancer SH2-phosphoprotein networks.

About

MSM model of SH2-phosphoprotein cancer networks

Resources

Stars

Watchers

Forks

Releases

No releases published

Packages

No packages published

Languages

  • Mathematica 99.9%
  • R 0.1%