Snakemake tutorial

This repository hosts the codes needed for the Snakemake tutorial which can be run within Jupyterlab environment

Name		Name	Last commit message	Last commit date
Latest commit History 45 Commits
binder		binder
data		data
envs		envs
scripts		scripts
sequences		sequences
.gitignore		.gitignore
LICENSE		LICENSE
README.md		README.md
Snakefile-2019-06-10		Snakefile-2019-06-10
Snakefile-2019-06-10b		Snakefile-2019-06-10b
Snakefile-2019-06-10c		Snakefile-2019-06-10c
Snakefile-2019-06-10d		Snakefile-2019-06-10d
Snakefile-2019-06-10d-v35		Snakefile-2019-06-10d-v35
Snakefile-2019-06-20a		Snakefile-2019-06-20a
Snakefile-2019-06-20b		Snakefile-2019-06-20b
Snakefile-2019-07-04a		Snakefile-2019-07-04a
Snakefile-2019-07-04b		Snakefile-2019-07-04b
Snakefile-2019-07-10		Snakefile-2019-07-10
Snakefile-2019-07-10b		Snakefile-2019-07-10b
Snakefile-all		Snakefile-all
Snakefile-all2		Snakefile-all2
Snakefile-env		Snakefile-env
Snakefile-wrap		Snakefile-wrap
Snakefile1		Snakefile1
Snakefile1-singularity		Snakefile1-singularity
Snakefile2		Snakefile2
Snakefile3		Snakefile3
Snakefile3-env		Snakefile3-env
Snakefile4		Snakefile4
Snakefile5		Snakefile5
Snakefile6		Snakefile6
config.yaml		config.yaml
config_calib.yaml		config_calib.yaml
config_folder.yaml		config_folder.yaml
config_trimmer.yaml		config_trimmer.yaml
dag-all.svg		dag-all.svg
dag.svg		dag.svg
index.ipynb		index.ipynb
test_env.ipynb		test_env.ipynb
test_wrap.ipynb		test_wrap.ipynb
tutorial-from-scratch.ipynb		tutorial-from-scratch.ipynb

alperyilmaz/conda-snakemake