More Numpy 2 Compatibility changes #2
Conversation
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
* Bump actions/upload-artifact from 3 to 4 Bumps [actions/upload-artifact](https://github.com/actions/upload-artifact) from 3 to 4. - [Release notes](https://github.com/actions/upload-artifact/releases) - [Commits](actions/upload-artifact@v3...v4) --- updated-dependencies: - dependency-name: actions/upload-artifact dependency-type: direct:production update-type: version-update:semver-major ... Signed-off-by: dependabot[bot] <support@github.com> * add overwrite:true to upload-artifact@v4 * unique names for each matrix/job * artifact without an 's' --------- Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> Co-authored-by: Jeremy Leung <jml230@pitt.edu>
* Bump actions/download-artifact from 3 to 4 Bumps [actions/download-artifact](https://github.com/actions/download-artifact) from 3 to 4. - [Release notes](https://github.com/actions/download-artifact/releases) - [Commits](actions/download-artifact@v3...v4) --- updated-dependencies: - dependency-name: actions/download-artifact dependency-type: direct:production update-type: version-update:semver-major ... Signed-off-by: dependabot[bot] <support@github.com> * add merge-multiple: true for download-artifact@v4 * download all artifact-* files * use pattern instead of name, should work now --------- Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> Co-authored-by: Jeremy Leung <jml230@pitt.edu>
Bumps [pypa/cibuildwheel](https://github.com/pypa/cibuildwheel) from 2.16.2 to 2.16.5. - [Release notes](https://github.com/pypa/cibuildwheel/releases) - [Changelog](https://github.com/pypa/cibuildwheel/blob/main/docs/changelog.md) - [Commits](pypa/cibuildwheel@v2.16.2...v2.16.5) --- updated-dependencies: - dependency-name: pypa/cibuildwheel dependency-type: direct:production update-type: version-update:semver-patch ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
* [pre-commit.ci] pre-commit autoupdate updates: - [github.com/psf/black-pre-commit-mirror: 23.12.1 → 24.1.1](psf/black-pre-commit-mirror@23.12.1...24.1.1) * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci --------- Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
* Bump codecov/codecov-action from 3 to 4 Bumps [codecov/codecov-action](https://github.com/codecov/codecov-action) from 3 to 4. - [Release notes](https://github.com/codecov/codecov-action/releases) - [Changelog](https://github.com/codecov/codecov-action/blob/main/CHANGELOG.md) - [Commits](codecov/codecov-action@v3...v4) --- updated-dependencies: - dependency-name: codecov/codecov-action dependency-type: direct:production update-type: version-update:semver-major ... Signed-off-by: dependabot[bot] <support@github.com> * Update test.yaml Add CODECOV_TOKEN for codecov-action@v4. --------- Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> Co-authored-by: Jeremy M. G. Leung <63817169+jeremyleung521@users.noreply.github.com>
* fix nested-yaml bug * test for yamlConfig
* oldest-numpy only for py<3.9; others require numpy>=1.25 * only specify python requirement at build time, not install time * 1.25.0 * be consistent with spacing * swap QuickInstall Page to InstallingWESTPA page * specify numpy <3 * specify run numpy <3
updates: - [github.com/psf/black-pre-commit-mirror: 24.1.1 → 24.2.0](psf/black-pre-commit-mirror@24.1.1...24.2.0) Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
updates: - [github.com/psf/black-pre-commit-mirror: 24.2.0 → 24.3.0](psf/black-pre-commit-mirror@24.2.0...24.3.0) Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
… is necessary for the labels to match up. (westpa#384)
* allow tstate files to contain empty line(s) and comments * achieve parity in bstate tstate load functions
* make github issues template description text disappear * comments need to be on new lines * but not on numbered points * make issues section headers actual headers * two lines at the end of templates * remove period after each section header
* specify errors to be HDF5 Framework related * specify segment number in pcoord shape error messages
Bumps [pypa/cibuildwheel](https://github.com/pypa/cibuildwheel) from 2.16.5 to 2.17.0. - [Release notes](https://github.com/pypa/cibuildwheel/releases) - [Changelog](https://github.com/pypa/cibuildwheel/blob/main/docs/changelog.md) - [Commits](pypa/cibuildwheel@v2.16.5...v2.17.0) --- updated-dependencies: - dependency-name: pypa/cibuildwheel dependency-type: direct:production update-type: version-update:semver-minor ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
Add this suggestion to a batch that can be applied as a single commit.
This suggestion is invalid because no changes were made to the code.
Suggestions cannot be applied while the pull request is closed.
Suggestions cannot be applied while viewing a subset of changes.
Only one suggestion per line can be applied in a batch.
Add this suggestion to a batch that can be applied as a single commit.
Applying suggestions on deleted lines is not supported.
You must change the existing code in this line in order to create a valid suggestion.
Outdated suggestions cannot be applied.
This suggestion has been applied or marked resolved.
Suggestions cannot be applied from pending reviews.
Suggestions cannot be applied on multi-line comments.
Suggestions cannot be applied while the pull request is queued to merge.
Suggestion cannot be applied right now. Please check back later.
ALEX: do not merge just yet.
Commits pulling
numpy2branch up tov2022.07and also an extra commit to fix some cython stuff that ruff didn't catch.All instances of numpy is locked to >=2.0.0rc1, so might have to change that before release/merge.
Had to install
mdtrajandpandasfrom source to test (since none of the released builds are numpy 2 compatible). h5py is also a little funky with numpy2, so tests might fail at this point. Some dependency versions are not released yet but are going to be numpy2-supported releases according to numpy/numpy#26191.