Pull the container:
docker pull airrc/rep-cred:latest
To launch the shiny application use the command below. Then open in your browser
http://localhost:3838.
docker run --rm -ti --user shiny -p 3838:3838 airrc/rep-cred:latest
If you are using linux, you may need to use the command line
docker run --rm --network host -ti --user shiny -p 3838:3838 airrc/rep-cred:latest
To open a terminal inside the container use:
docker run --rm --user shiny -p 3838:3838 airrc/rep-cred:latest bash
Pull the container:
docker pull airrc/rep-cred:latest
Get example data:
wget https://raw.githubusercontent.com/airr-community/rep-cred/master/inst/extdata/ExampleDb.tsv
Run repcred:
docker run --rm -v $(pwd):/home:z airrc/rep-cred:latest repcred -r ExampleDb.tsv -o repcred-report
Repcred requires a recent version of pandoc. This is installed with Rstudio and the easiest approach is to check that you are using a recent version, although other installation methods are described in the documentation.
Repdred can be installed from github:
devtools::install_github('airr-community/rep-cred')
Repcred can be started from an R prompt as follows:
library(repcred)
repcredWeb()
