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ahwillia committed Dec 23, 2015
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PyNeuron-Toolbox
================

### To see a demo in a Jupyter Notebook: [CLICK HERE](http://alexhwilliams.info/code/pyneuron_morph.html)
### To see a live demo in a Jupyter Notebook: [CLICK HERE](http://mybinder.org/repo/ahwillia/PyNeuron-Toolbox)

The [NEURON simulation environment](http://www.neuron.yale.edu/neuron/) is one of the most popular options for simulating multi-compartment neuron models. [Hines et al. (2009)](http://journal.frontiersin.org/Journal/10.3389/neuro.11.001.2009/abstract) developed a module that allowed users to execute simulations from python. This option appears to be very popular with users.

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I am updating this repository on a semi-regular basis, so check back for updates and [contact me](http://alexhwilliams.info) if you have questions.

Tutorials
==========
At the moment, only a few basic functions are included in the toolbox. These mostly relate to visualizing the morphology of model cells. [Click here for a tutorial on the morphology toolbox](http://alexhwilliams.info/code/pyneuron_morph.html) - the animations seem to work best when viewed in Chrome.

Future Plans
============
I would like to add functions to support:
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