This repository provides scripts and code used in the following paper, which combines task-based fMRI (Stroop task) with rTMS modulation:
- Beynel L, Gura H, Rezaee Z, Ekpo EC, Deng ZD, Joseph JO, Taylor P, Luber B, Lisanby SH (2024). Lessons learned from an fMRI-guided rTMS study on performance in a numerical Stroop task. PLoS One. 19(5):e0302660. doi: 10.1371/journal.pone.0302660.
The MRI dataset processing here primarily uses AFNI (Cox, 1996).
The scripts/ directory contains the set of processing scripts used here.
scripts/
do_12*.bash: perform skullstripping and nonlinear warping of the T1w anatomical to template space (using AFNI's @SSwarper)
do_20*.bash: create an FMRI pipeline script and execute it (using AFNI's afni_proc.py)
do_30*.bash: create an inverse warp from the standard template to each individual subject's T1w anatomical
do_31*.bash: create an inverse warp from the standard template to each individual subject's T1w anatomical (an alternative approach to do_30*bash).