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mkdocs.yml
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mkdocs.yml
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# Project information
site_name: pycoQC
site_description: PycoQC computes metrics and generates interactive QC plots for Oxford Nanopore technologies sequencing data
site_author: Adrien Leger & Tommaso Leonardi
site_url: https://adrienleger.com/pycoQC
# Repository
repo_name: 'a-slide/pycoQC'
repo_url: https://github.com/a-slide/pycoQC
# Copyright
copyright: Copyright © 2020 Adrien Leger & Tommaso Leonardi
# Navigation menu
nav:
- Home: index.md
- Installation instructions: installation.md
- pycoQC Usage:
- Using pycoQC: pycoQC/usage.md
- jupyter API usage: pycoQC/API_usage.ipynb
- Command line usage: pycoQC/CLI_usage.ipynb
- Barcode_split Usage:
- Using Barcode_split: Barcode_split/usage.md
- jupyter API usage: Barcode_split/API_usage.ipynb
- Command line usage: Barcode_split/CLI_usage.ipynb
- Fast5_to_seq_summary Usage:
- Using Fast5_to_seq_summary: Fast5_to_seq_summary/usage.md
- jupyter API usage: Fast5_to_seq_summary/API_usage.ipynb
- Command line usage: Fast5_to_seq_summary/CLI_usage.ipynb
- Citing pycoQC: citing.md
- Acknowledgements: acknowledgements.md
- Alternative and complementary packages: alternative.md
- Contributing Guidelines: contributing.md
- Code of conduct: code_of_conduct.md
- Licence: licence.md
- Changelog: changelog.md
# Theme customization
theme:
name: 'material'
highlightjs: true
font: false
markdown_extensions:
- admonition
- codehilite
- pymdownx.betterem:
smart_enable: all
- pymdownx.caret
- pymdownx.critic
- pymdownx.details
- pymdownx.emoji:
emoji_generator: !!python/name:pymdownx.emoji.to_svg
- pymdownx.inlinehilite
- pymdownx.magiclink:
repo_url_shorthand: true
user: a-slide
repo: pycoQC
- pymdownx.mark
- pymdownx.smartsymbols
- pymdownx.superfences
- pymdownx.tasklist:
custom_checkbox: true
- pymdownx.tilde
plugins:
- mknotebooks