Pinned

1. Sekator Sekator Public archive

   Multithreaded quality and adapter trimmer for PAIRED fastq files (Python2.7/Cython/C)

   Python 3 2

2. pycoSnake pycoSnake Public

   pycoSnake is a neatly wrapped collection of snakemake workflows for analysing nanopore and Illumina sequencing data

   Python 7 1

3. pycoMeth pycoMeth Public archive

   DNA methylation analysis downstream to Nanopolish for Oxford Nanopore DNA sequencing datasets

   Python 33 2

4. versipy versipy Public

   Versatile version and medatada managment across the python packaging ecosystem with git integration

   Python 1 1

5. pycoQC pycoQC Public

   pycoQC computes metrics and generates Interactive QC plots from the sequencing summary report generated by Oxford Nanopore technologies basecaller (Albacore/Guppy)

   Python 238 38

6. NanoCount NanoCount Public

   EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2

   Python 52 5