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Hello,
I was trying to reproduce the example for custom annotated gene list given here. I downloaded the data from the given url in the example.
I was able to get a similar result and I understand the GeneRatio and BgRatio.
But my case has a single term ID - I pass a TF's target genes in column 2, and column 1 is my annotation “TF”, which is the same for all rows. Input is a list of genes. I wanted to check if the overlap between these two lists is significant.
I try to reproduce it with the example in the documentation.
But I don't understand GeneRatio and BgRatio now, which is what I was getting in my case as well.
Could someone explain me the output when there's only one term ID in TERM2GENE input?
The text was updated successfully, but these errors were encountered:
mansi-aggarwal-2504
changed the title
When there's only one term ID passed to enricher's TERM2GENE
When there's only one term ID passed as TERM2GENE in enricher
Jan 11, 2024
mansi-aggarwal-2504
changed the title
When there's only one term ID passed as TERM2GENE in enricher
When there's only one term ID in the dataframe passed as TERM2GENE in enricher
Jan 11, 2024
Hello,
I was trying to reproduce the example for custom annotated gene list given here. I downloaded the data from the given url in the example.
I was able to get a similar result and I understand the
GeneRatio
andBgRatio
.But my case has a single term ID - I pass a TF's target genes in column 2, and column 1 is my annotation “TF”, which is the same for all rows. Input is a list of genes. I wanted to check if the overlap between these two lists is significant.
I try to reproduce it with the example in the documentation.
But I don't understand
GeneRatio
andBgRatio
now, which is what I was getting in my case as well.Could someone explain me the output when there's only one term ID in TERM2GENE input?
The text was updated successfully, but these errors were encountered: