Replies: 1 comment
-
|
In this case, the ORA algorithm is suitable. |
Beta Was this translation helpful? Give feedback.
0 replies
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
-
I am working on a microarray dataset that has 860 genes in total. I did DE gene expression analysis, there were 60 up regulated genes and 80 down-regulated genes.
I would like to do enrichment analysis. Would it appropriate to use over-representation analysis (ORA), or even gene set enrichment analysis (GSEA)? My concern is the 860 gene microarray is a much reduced gene set compared to whole transcriptome, and it might introduce bias. Any comments are welcome!
Beta Was this translation helpful? Give feedback.
All reactions