GitHub - YuLab-SMU/biomedical-knowledge-mining-book: :books: Biomedical knowledge mining using GOSemSim and clusterProfiler

Name		Name	Last commit message	Last commit date
Latest commit History 39 Commits
cache		cache
datasets		datasets
figures		figures
.gitignore		.gitignore
01_overview_semantic_similarity.Rmd		01_overview_semantic_similarity.Rmd
02_GOSimSim.Rmd		02_GOSimSim.Rmd
03_DOSE_Semantic_Similarity.Rmd		03_DOSE_Semantic_Similarity.Rmd
04_meshes_Semantic_Similarity.Rmd		04_meshes_Semantic_Similarity.Rmd
05_overview_enrichment_analysis.Rmd		05_overview_enrichment_analysis.Rmd
06_GO.Rmd		06_GO.Rmd
07_KEGG.Rmd		07_KEGG.Rmd
08_WikiPathways.Rmd		08_WikiPathways.Rmd
09_Reactome.Rmd		09_Reactome.Rmd
10_DO_enrichment.Rmd		10_DO_enrichment.Rmd
11_meshes_enrichment.Rmd		11_meshes_enrichment.Rmd
12_universal_enrichment.Rmd		12_universal_enrichment.Rmd
13_ChIPseeker_Genomic_coordination.Rmd		13_ChIPseeker_Genomic_coordination.Rmd
14_compareCluster.Rmd		14_compareCluster.Rmd
15_enrichplot_visualization.Rmd		15_enrichplot_visualization.Rmd
16_dplyr.Rmd		16_dplyr.Rmd
17_useful_utilities.Rmd		17_useful_utilities.Rmd
A-app-faq.Rmd		A-app-faq.Rmd
B-references.Rmd		B-references.Rmd
COVID19_GeneSets.gmt		COVID19_GeneSets.gmt
Makefile		Makefile
_bookdown.yml		_bookdown.yml
_output.yaml		_output.yaml
clusterProfiler-diagram.R		clusterProfiler-diagram.R
index.Rmd		index.Rmd
references.bib		references.bib
todo.md		todo.md

YuLab-SMU/biomedical-knowledge-mining-book