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Using qtools as-is with Python3 results in a string/bytes error.
qtools
--------------------------------------------------------------------------- TypeError Traceback (most recent call last) <ipython-input-9-013388eb4186> in <module>() 1 import qtools 2 ----> 3 qtools.Submitter([command], 'macaulay2016_featurecounts', ppn=threads, walltime='24:00:00', queue='home-scrm') /home/obotvinnik/workspace-git/qtools/qtools/submitter.py in __init__(self, commands, job_name, queue_type, sh, array, nodes, ppn, walltime, queue, account, out, err, max_running, submit, chunksize) 125 126 if self.chunksize is None: --> 127 self.job() 128 else: 129 chunks = len(self.commands) / self.chunksize /home/obotvinnik/workspace-git/qtools/qtools/submitter.py in job(self) 257 258 elif self.queue_type == 'PBS': --> 259 self._write_pbs(sh_file) 260 261 if self.array: /home/obotvinnik/workspace-git/qtools/qtools/submitter.py in _write_pbs(self, sh_file) 307 self._write_additional_resources(sh_file) 308 --> 309 if self.array: 310 if self.max_running is not None: 311 sh_file.write("%s -t 1-%d%%%d\n" % ( /home/obotvinnik/workspace-git/qtools/qtools/submitter.py in array(self) 152 # self._array is the user-supplied whether or not to use the array 153 return self._array --> 154 elif ("oolite" in HOSTNAME) or ("compute" in HOSTNAME): 155 return True 156 elif 'tscc' in HOSTNAME: TypeError: a bytes-like object is required, not 'str'
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Using
qtools
as-is with Python3 results in a string/bytes error.The text was updated successfully, but these errors were encountered: