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add rnaseq form(s) #32

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byee4 opened this issue Oct 21, 2022 · 1 comment
Open

add rnaseq form(s) #32

byee4 opened this issue Oct 21, 2022 · 1 comment
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@byee4
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byee4 commented Oct 21, 2022

There should be two forms: one for single end (wf_rnaseqscatter_se) and one for paired end (wf_rnaseqscatter_pe). In the paired-end manifest, I've added some documentation/comments to hopefully help, but the one challenging aspect will be creating another Fastq model (so move Fastq -> ClipFastq, and create another model called RnaseqFastq)

wf_rnaseqscatter_se.txt
wf_rnaseqscatter_pe.txt

Happy to discuss over zoom at any point on or before Friday, lmk

@byee4
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byee4 commented Nov 10, 2022

we might actually be able to modify the Fastq object to be used for both eCLIP and RNAseq data. Let's figure out what we can do next time we catch up

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