cyclops 0.2.8 release

What's Changed

• [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in #601
• Bump jinja2 from 3.1.3 to 3.1.4 by @dependabot in #603
• Bump onnx from 1.15.0 to 1.16.0 by @dependabot in #605
• Bump bentoml from 1.2.0 to 1.2.5 by @dependabot in #602
• Bump jupyterlab from 3.6.6 to 3.6.7 by @dependabot in #604
• Improve intersectional slicing by @fcogidi in #606
• Update codecov actions by @amrit110 in #612
• Bump docker/login-action from 2.1.0 to 3.1.0 by @dependabot in #609
• Bump docker/metadata-action from 9ec57ed1fcdbf14dcef7dfbe97b2010124a938b7 to 2ee3d3070bb41b40bf7305d15233321e12c1dc5c by @dependabot in #610
• Bump docker/build-push-action from 4.0.0 to 5.3.0 by @dependabot in #608
• Bump actions/setup-python from 5.0.0 to 5.1.0 by @dependabot in #611
• Bump pypa/gh-action-pypi-publish from 1.4.2 to 1.8.14 by @dependabot in #607
• Refactor slice functions and evaluators by @fcogidi in #613
• [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in #617
• Fix comment in slicer docstring by @amrit110 in #618
• Bump peaceiris/actions-gh-pages from 3.9.3 to 4.0.0 by @dependabot in #614
• Bump Wandalen/wretry.action from 1.4.4 to 3.5.0 by @dependabot in #615
• Bump actions/checkout from 4.1.1 to 4.1.5 by @dependabot in #616

New Contributors

• @dependabot made their first contribution in #603

Full Changelog: v0.2.7...v0.2.8

cyclops 0.2.7 release

What's Changed

• Adjust integration test workflow to run on cyclops vm runner by @amrit110 in #594
• Add test parallelization by @fcogidi in #596
• Upgrade datasets by @fcogidi in #595
• Add report user guide notebook by @rjavadi in #589
• Reduce number of workers for running tests by @fcogidi in #599
• [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in #598
• Fix import_optional_module function to return NoneType by @amrit110 in #597
• Update tqdm by @amrit110 in #600

New Contributors

• @pre-commit-ci made their first contribution in #598

Full Changelog: v0.2.6...v0.2.7

cyclops 0.2.6 release

What's Changed

• Refactor create_metric_cards fn to smaller functions by @amrit110 in #586
• Fix copy on type change by @fcogidi in #588
• Update array-api-compat version by @fcogidi in #590
• Add support for plotting calibration curve by @amrit110 in #587
• Add js deps to fix plotly rendering by @amrit110 in #591
• Remove use of get_device in base task class by @amrit110 in #593
• Update deploy/README.md by @fcogidi in #592

Full Changelog: v0.2.5...v0.2.6

cyclops 0.2.5 release

What's Changed

• fix typos by @fcogidi in #581
• Last n evals fix by @a-kore in #583
• Test report module by @rjavadi in #584
• Fix report single metric by @a-kore in #585

Full Changelog: v0.2.4...v0.2.5

cyclops 0.2.4 release

What's Changed

• Update to pillow 10.0 which has important security fixes by @amrit110 in #551
• Improve documentation for evaluate package by @rjavadi in #543
• Small fix to readme, and contributing docs by @amrit110 in #552
• Add example deployment scripts by @amrit110 in #553
• Prefer generator over list by @hoxell in #555
• Apply ruff formatter and ditch black by @amrit110 in #554
• Update github actions to latest release versions by @amrit110 in #556
• Small fix to docs deploy poetry install, update contrib md by @amrit110 in #557
• Add Matthews Correlation Coefficient (MCC) metric by @fcogidi in #550
• Revert "Add Matthews Correlation Coefficient (MCC) metric" by @fcogidi in #560
• Move jinja macros to separate file for readability by @amrit110 in #559
• Add pip audit to code check workflow by @amrit110 in #563
• Remove aggfuncs constraint by @amrit110 in #564
• Use furo sphinx theme in line with aieng-template by @amrit110 in #565
• Add discharge prediction notebook by @amrit110 in #566
• First pass at refactoring jinja template by @amrit110 in #567
• Small fixes to discharge prediction notebook by @amrit110 in #568
• Fix minor bugs in ClassificationPlotter by @rjavadi in #571
• Documentation: Add evaluation examples by @rjavadi in #569
• Extend to python 3.11 support by @amrit110 in #573
• Use namedtuple to store curve results (ROC, PR) by @amrit110 in #572
• Add Matthews Correlation Coefficient by @fcogidi in #561
• Test report module by @rjavadi in #570
• Update ruff and run on codebase by @amrit110 in #577
• Add threshperf plot, tests and example use by @amrit110 in #575
• Update dependencies by @amrit110 in #580
• Add ability to truncate report and centralise report generation. by @a-kore in #579

New Contributors

• @rjavadi made their first contribution in #543

Full Changelog: v0.2.3...v0.2.4

cyclops 0.2.3 release

What's Changed

• Minor patches by @fcogidi in #542
• Add Precision-Recall Curve to experimental metrics by @fcogidi in #544
• Add ROC curve by @fcogidi in #545
• Add AUROC by @fcogidi in #546
• Add regression metrics by @fcogidi in #547
• Integrate experimental metrics with other modules by @fcogidi in #549

Full Changelog: v0.2.2...v0.2.3

cyclops 0.2.2 release

What's Changed

• Add unit tests for some utils functions used in data package by @amrit110 in #532
• Add MetricDict by @fcogidi in #533
• Fix mypy issue by adding plugin, add tests by @amrit110 in #534
• Add Specificity by @fcogidi in #536
• Add aliases for precision and recall by @fcogidi in #537
• Add Negative Predictive Value by @fcogidi in #538
• Relax numpy version, fix integration test by @amrit110 in #540
• Add True Negative Rate (TNR) by @fcogidi in #541

Full Changelog: v0.2.1...v0.2.2

cyclops 0.2.1 release

What's Changed

• Add sampler to mortality prediction task to treat class imbalance by @amrit110 in #521
• Fix metrics examples, add average precision metric by @amrit110 in #522
• Add accuracy metric by @fcogidi in #523
• Fix PR curve (order), add AUPRC to comparison plot by @amrit110 in #524
• Add precision and recall by @fcogidi in #525
• Refactor aggregator use fit, transform methods by @amrit110 in #526
• Add F-score by @fcogidi in #527
• Patch array formatting for metrics by @fcogidi in #528
• Add some unit tests for the ModelCardReport methods by @amrit110 in #529
• Remove outdated notebooks, add first ICU mortality prediction benchmark by @amrit110 in #530
• Fix report formatting by @a-kore in #531

Full Changelog: v0.2.0...v0.2.1

cyclops 0.2.0 release

What's Changed

• Remove use of dask, update to pandas 2.0, fix tests by @amrit110 in #497
• Report Template Update by @a-kore in #496
• added model info card to sidebar by @KaranSwatch in #498
• Update model report links by @amrit110 in #500
• Add separate classes for classification tasks by @amrit110 in #501
• fix slice title formatting error by @a-kore in #502
• Fix typing for kwargs parameter in create_metric_fn by @amrit110 in #503
• Convert task classes to more generic so they can be re-used by @amrit110 in #504
• Add experimental metrics package following the array API standard by @fcogidi in #499
• Clean up process package fns, enable mypy by @amrit110 in #505
• Fix tasks doc by @amrit110 in #508
• Report Update - Add timestamps, multi-plot selection and selection filtering by @a-kore in #507
• Minor improvements to the evaluators and metrics by @fcogidi in #509
• Reorganize package dependencies by @fcogidi in #506
• Clean up use cases, add new tabular prediction on MIMICIV by @amrit110 in #510
• Add confusion matrix example to tutorial notebook by @amrit110 in #511
• add plots back to quant-analysis section by @a-kore in #512
• Small fix to notebooks by @amrit110 in #514
• Update pyarrow version, use pyarrow backend for pandas by @amrit110 in #513
• Decouple models from evaluate package by @fcogidi in #516
• Fix report missing slices by @a-kore in #518
• Make additional library dependencies optional by @amrit110 in #515
• make sections collapsible and set default as collapsed by @KaranSwatch in #517
• Unify process package into data by @amrit110 in #519
• Remove cupy install from integration test workflow by @amrit110 in #520

New Contributors

• @KaranSwatch made their first contribution in #498

Full Changelog: v0.1.40...v0.2.0

CyclOps v0.2.0.dev0

What's Changed

• Remove use of dask, update to pandas 2.0, fix tests by @amrit110 in #497
• Report Template Update by @a-kore in #496
• added model info card to sidebar by @KaranSwatch in #498
• Update model report links by @amrit110 in #500
• Add separate classes for classification tasks by @amrit110 in #501
• fix slice title formatting error by @a-kore in #502

New Contributors

• @KaranSwatch made their first contribution in #498

Full Changelog: v0.1.40...v0.2.0.dev0