This repository is an Example using GitHub Actions [egge] for the Advanced Programming with R class. The project consists of a quarto document updated once a week or whenever there’s a push or pull request. It performs a search on PubMed looking for the latest papers about Agent-Based Models. The last update was on 2024-05-19 00:40:16.
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Critical properties of Heider balance on multiplex networks.
Mohandas K, Suchecki K, Hołyst JA.
Phys Rev E. 2024 Apr;109(4-1):044306. doi: 10.1103/PhysRevE.109.044306.
Since people’s relations are rarely single faceted, we investigate Heider balance dynamics on a multiplex network, consisting of several copies of the same agent displaying correlated relations at different layers building the multiplex. Intralayer interactions in our model …
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Socioeconomic agents as active matter in nonequilibrium Sakoda-Schelling models.
Zakine R, Garnier-Brun J, Becharat AC, Benzaquen M.
Phys Rev E. 2024 Apr;109(4-1):044310. doi: 10.1103/PhysRevE.109.044310.
How robust are socioeconomic agent-based models with respect to the details of the agents’ decision rule? …We believe our approach provides a unifying framework to further study geography-dependent agent-based models, notably paving the …
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Model-Driven Decision Support: A Community-Based Meta-Implementation Strategy to Predict Population Impact.
Johnson K, Vermeer W, Hills H, Chin-Purcell L, Barnett J, Burns T, Dean MJ, Hendricks Brown C.
Ann Epidemiol. 2024 May 14:S1047-2797(24)00066-8. doi: 10.1016/j.annepidem.2024.05.002. Online ahead of print.
METHODS: We describe a community-based model-driven decision support (MDDS) approach that requires community engagement, local data, and predictive modeling tools (agent-based modeling in our case studies) to improve decision-making on implement …
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Impact of redefining statistical significance on P-hacking and false positive rates: An agent-based model.
Fitzpatrick BG, Gorman DM, Trombatore C.
PLoS One. 2024 May 16;19(5):e0303262. doi: 10.1371/journal.pone.0303262. eCollection 2024.
In response, it has been proposed that the threshold for statistical significance be changed from 0.05 to 0.005. The aim of the current study was to use an evolutionary agent-based model comprised of researchers who test hypotheses and strive to increase thei …
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Development and validation of the Michigan Chronic Disease Simulation Model (MICROSIM).
Burke JF, Copeland LL, Sussman JB, Hayward RA, Gross AL, Briceño EM, Whitney R, Giordani BJ, Elkind MSV, Manly JJ, Gottesman RF, Gaskin DJ, Sidney S, Yaffe K, Sacco RL, Heckbert SR, Hughes TM, Galecki AT, Levine DA.
PLoS One. 2024 May 16;19(5):e0300005. doi: 10.1371/journal.pone.0300005. eCollection 2024.
This manuscript describes the design principles, implementation details, and population-level validation of a novel population-health microsimulation framework, the MIchigan ChROnic Disease SIMulation (MICROSIM), for The Effect of Lower Blood Pressure over the Life Course on Late …
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Task-oriented machine learning surrogates for tipping points of agent-based models.
Fabiani G, Evangelou N, Cui T, Bello-Rivas JM, Martin-Linares CP, Siettos C, Kevrekidis IG.
Nat Commun. 2024 May 15;15(1):4117. doi: 10.1038/s41467-024-48024-7.
We present a machine learning framework bridging manifold learning, neural networks, Gaussian processes, and Equation-Free multiscale approach, for the construction of different types of effective reduced order models from detailed agent-based simulators and …
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Interactions between pili affect the outcome of bacterial competition driven by the type VI secretion system.
Otto SB, Servajean R, Lemopoulos A, Bitbol AF, Blokesch M.
Curr Biol. 2024 May 10:S0960-9822(24)00513-X. doi: 10.1016/j.cub.2024.04.041. Online ahead of print.
To determine the factors that enable or hinder the T6SS’s targeted reduction of competitors carrying pili, we developed a physics-grounded computational model for autoaggregation. Collectively, our research demonstrates that T4Ps involved in cell-to-cell contact can impose …
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Making evidence go further: Advancing synergy between agent-based modeling and randomized control trials.
Hammond RA, Barkin S.
Proc Natl Acad Sci U S A. 2024 May 21;121(21):e2314993121. doi: 10.1073/pnas.2314993121. Epub 2024 May 15.
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Quantitative systems pharmacology modeling of tumor heterogeneity in response to BH3-mimetics using virtual tumors calibrated with cell viability assays.
Derippe T, Fouliard S, Decleves X, Mager DE.
CPT Pharmacometrics Syst Pharmacol. 2024 May 15. doi: 10.1002/psp4.13158. Online ahead of print.
This article proposes a new quantitative systems pharmacology (QSP)-based methodology in which cell viability assays are used to calibrate virtual tumors (VTs) made of virtual cells whose fate is determined by simulations from an apoptosis QSP model. VTs representing SU-DH …
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Wireless sequential dual light delivery for programmed PDT in vivo.
Liu J, Sun B, Li W, Kim HJ, Gan SU, Ho JS, Rahmat JNB, Zhang Y.
Light Sci Appl. 2024 May 15;13(1):113. doi: 10.1038/s41377-024-01437-x.
Optimal irradiation time, dose, and RB-M concentration were determined using an agent-based digital simulation method. In vitro and in vivo validation experiments in an orthotopic rat liver hepatocellular carcinoma disease model confirmed that the nanocarrier …
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