3.14.240528

Minor release

• Updates Freyja to 1.5.0-05_27_2024-01-08-2024-05-28

3.14.240521

Moderate Release:

• Fixes typos for args in minimap2 and artic processes
• Updates freyja to 1.5.0-05_17_2024-01-06-2024-05-21
• Updates iqtree2 to 2.3.1
• Updates nextclade to 3.5.0

3.13.20240514

Minor release:

• Updates freyja to 1.5.0-05_11_2024-01-10-2024-05-14

3.13.20240507

Minor update

• updates pangolin to 4.3.1-pdata-1.27

3.13.20240430

Minor release:

• Updates Freyja to 1.5.0-04_30_2024-01-10-2024-04-30
• Updates included SARS-CoV-2 nextclade dataset (use by setting params.download_nextclade_dataset = false)

3.13.20240423

Minor update

• Update bcftools to 1.20
• Update samtools to 1.20
• Update minimap2 to 2.28
• Update nextclade to 3.4.0
• Update freyja to 1.5.0-04_23_2024-00-44-2024-04-23

3.13.20240416

Minor release:

• Updates Freyja to 1.5.0-04_14_2024-00-49-2024-04-16
• Updates included SARS-CoV-2 nextclade dataset (use by setting params.download_nextclade_dataset = false)

3.13.20240409

Minor release:

• Updates freyja to 1.5.0-04_09_2024-00-44-2024-04-09

3.13.20240402

Minor release:

• update Freyja to 1.5.0-04_02_2024-00-47-2024-04-02

3.13.20240326

Minor release:

• Update freyja to 1.5.0-03_25_2024-00-45-2024-03-26
• Update mafft to 7.520
• Update bbnorm to 39.06