For cd-hit

How to compile?
  1. Compile with multi-threading support (default): make
  2. Compile without multi-threading support (if you are on very old systems): make openmp=no


For cd-hit-auxtools
  cd cd-hit-auxtools
  make


For psi-cd-hit
  please download legacy BLAST (not BLAST+) and install the executables in your $PATH


For more information, please visit http://cd-hit.org

Most up-to-date documents are available at https://github.com/weizhongli/cdhit/wiki

cd-hit is also available as web server, visit http://cd-hit.org for web server address.