OMERO for Developers

Materials for the OMERO for Developers workshop at the Jackson Laboratory, which covers:

• Using BlitzGateway and ezomero to view images from OMERO in Python
• Retrieving thumbnails using the JSON API
• Introduction to the Zarr file format

Set up your environment

If you use Conda:

conda env create -f environment.yml

Otherwise:

You'll need to install dependencies yourself. This workshop will use jupyterlab, ezomero, matplotlib, ome-zarr and omero-cli-zarr. Latest versions should be fine.

Workshop notebooks

1-Introduction.ipynb

2-JSON_API.ipynb

3-Blitz_API.ipynb

4-Zarr.ipynb