Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Log file cuts at 80 characters #269

Open
JohnHadish opened this issue Nov 24, 2022 · 0 comments
Open

Log file cuts at 80 characters #269

JohnHadish opened this issue Nov 24, 2022 · 0 comments

Comments

@JohnHadish
Copy link
Collaborator

Description of feature

The Log File for GEMmaker cus off at 80 characters:

Example:

[-        ] process > GEMmaker:get_software_versions -
[96/b6b412] process > GEMmaker:retrieve_sra_metadata [100%] 1 of 1, cached: 1 ✔
[ee/c43d3c] process > GEMmaker:download_runs (SRX... [ 99%] 1620 of 1633, cac...
[a4/c9db16] process > GEMmaker:fastq_dump (SRX781... [ 97%] 1582 of 1615, cac...
[2b/ac6ec7] process > GEMmaker:fastq_merge (SRX74... [ 96%] 1524 of 1577, cac...
[97/45e7aa] process > GEMmaker:fastqc_1 (SRX7354455) [ 98%] 1503 of 1520, cac...
[d4/ee55e9] process > GEMmaker:kallisto (SRX7478593) [ 98%] 1504 of 1521, cac...
[33/77d59c] process > GEMmaker:kallisto_tpm (SRX8... [ 99%] 1499 of 1503, cac...
[3d/4d6848] process > GEMmaker:next_sample (SRX75... [100%] 1510 of 1510
[-        ] process > GEMmaker:multiqc               -
[-        ] process > GEMmaker:create_gem            -
[-        ] process > GEMmaker:failed_run_report     -
[e6/d02956] process > GEMmaker:clean_work_files (... [100%] 4601 of 4601, cac...
[68/bcc392] process > GEMmaker:clean_work_dirs (S... [100%] 1499 of 1499, cac...

There is often useful information outside of 80 characters, especially when a user uses resume

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Projects
None yet
Development

No branches or pull requests

1 participant