Systems Biology Lab, Vrije Universiteit Amsterdam
This is the code repository of the Systems Biology Lab. Our lab studies the molecular networks inside cells that give rise to cell behaviour and fitness.
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- Amsterdam, The Netherlands
- http://teusinkbruggemanlab.nl/
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- cbmpy-metadraft Public
CBMPy Metadraft: a flexible and extensible genome-scale model reconstruction tool
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- analysis-of-EDA-data Public
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- elementary-mode-based-FBA-rationale Public
Code that uses Elementary Conversion Mode computation to obtain all relevant conversions for a constraint-based optimization problem, i.e., all possible optimal yields between the constrained nutrients and the objective function. As published in Metabolites https://doi.org/10.3390/metabo11050257