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[Container Request]: clair3 #933

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kapsakcj opened this issue Mar 25, 2024 · 0 comments
Open

[Container Request]: clair3 #933

kapsakcj opened this issue Mar 25, 2024 · 0 comments
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enhancement New feature or request

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@kapsakcj
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What tool are you looking for and why?

https://github.com/HKU-BAL/Clair3

variant caller for nanopore data. They provide a dockerfile and pre-built images on dockerhub but may be useful to add our own dockerfile here.

dockerfile for reference: https://github.com/HKU-BAL/Clair3/blob/main/Dockerfile

Looks like a pretty complicated install with various python C/C++ dependencies as well as bioinfo tools like samtools. I would probably go with the micromamba route and install things via micromamba/conda

@kapsakcj kapsakcj added the enhancement New feature or request label Mar 25, 2024
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