v0.9.0

SpeedyWeather v0.9.0

Diff since v0.8.0

Merged pull requests:

• Solar zenith angle calculation (#438) (@milankl)
• ImmediateCondensation and Clausius-Clapeyron (#439) (@milankl)
• Flux limiters for surface drag and heat fluxes (#440) (@milankl)
• Bulk Richardson number-based boundary layer drag (#441) (@milankl)
• Simplified BettsMiller convection (#442) (@milankl)
• Simple radiation schemes: UniformCooling, TransparentShortwave (#444) (@milankl)
• ImplicitCondensation not immediate anymore (#447) (@milankl)
• AquaPlanetMask (#450) (@milankl)
• Use Documenter.@docs functionality to display docstring in Documentation (#451) (@navidcy)
• Run LowerTriangularMatrix and output examples while building the docs (#453) (@navidcy)
• Some more examples running live in the Docs (#454) (@navidcy)
• Callbacks (#455) (@milankl)
• Restructuring the docs (#457) (@milankl)
• Collapse levels to streamline the documentation navigation (#458) (@natgeo-wong)
• Parametric models, non-parametric abstract types, remove DynamicsConstants, Dict of callbacks (#459) (@milankl)
• Particle advection in 2D, all models (#465) (@milankl)
• Dry Betts-Miller convection (#467) (@milankl)
• Add dependabot (#468) (@milankl)
• Initial conditions modular for variables (#469) (@milankl)
• Remove DEFAULT_NF generators of Earth and EarthAtmosphere (#470) (@milankl)
• Bump actions/cache from 3 to 4 (#471) (@dependabot[bot])
• Bump actions/checkout from 3 to 4 (#472) (@dependabot[bot])
• Add space after comma (#473) (@navidcy)
• Change arg name for isincreasing/isdecreasing to agree w docstring (#474) (@navidcy)
• Fix the Docs/SpeedyTransforms/Geostrophy example + make it run live by doc built (#475) (@navidcy)
• Remove testing for 1.8 and 1.9 temporarily (#476) (@milankl)
• Add space after semicolon (#477) (@navidcy)
• Delete deprecated doc instructions (#479) (@navidcy)
• Add @ids for model pages + add links to models pages in Docs landing page (#481) (@navidcy)
• ParticleTracker with netCDF (#484) (@milankl)
• rand(Particle) cos-distribution corrected (#485) (@milankl)
• Update README.md (#486) (@milankl)
• Bump to v0.9 (#487) (@milankl)

Closed issues:

• online particle tracking (#413)
• Convection too weak?! (#436)
• Condensation fireworks (#445)
• [JOSS Review] firstnames vs. initials in .bib file (#449)
• Question about example in Docs/SpeedyTransforms/Geostrophy (#452)
• Precompilation Error (#466)

v0.8.0

SpeedyWeather v0.8.0

Diff since v0.7.1

Merged pull requests:

• Make prognostics available for forcing, drag in Barotropic/SWM (#423) (@milankl)
• Stochastic stirring video (#424) (@milankl)
• Add random wave video (#425) (@milankl)
• Export forcing!, drag!, etc for extending those with fewer conflicts (#426) (@milankl)
• CompatHelper: bump compat for Adapt to 4, (keep existing compat) (#427) (@milankl)
• Use Julia v1.10 for CI and building Docs (#428) (@navidcy)
• Add compat entry for NCDatasets v0.14 (#429) (@navidcy)
• Adjust time step with radius (#430) (@milankl)
• Add remark about Julia compat (#431) (@navidcy)
• Switch off dynamics (#432) (@milankl)
• Vertical diffusion of humidity (#433) (@milankl)
• NoBoundaryLayer but TemperatureRelaxation default for dry & wet models (#435) (@milankl)
• bump to v0.8 (#437) (@milankl)

Closed issues:

• Literated example with the animation that is currently in README? (#297)
• Global shallow-water run (#323)
• Hybrid vertical coordinates (#329)
• What constitutes the 'state' of the model at a particular timestep (#347)
• SpeedyWeather's logic and information flow (#350)
• Zanna & Bolton eddy parameterization (#402)

v0.7.1

SpeedyWeather v0.7.1

Diff since v0.7.0

Merged pull requests:

• Period Keyword Argument instead of n_days (#420) (@maximilian-gelbrecht)
• JOSS badge added (#421) (@milankl)
• bump to v0.7.1 (#422) (@milankl)

Closed issues:

• Given user-facing parameters that represent a time period actually units (#417)

v0.7.0

SpeedyWeather v0.7.0

Diff since v0.6.0

Merged pull requests:

• Forcing and drag for the ShallowWaterModel (#376) (@milankl)
• eta/pres was not output (#378) (@milankl)
• RandomWaves initial conditions (#379) (@milankl)
• scale_coslat funcs without Geometry, moved to RingGrids (#381) (@milankl)
• Set lmax+1 row to zero in divergence!, curl! (#383) (@milankl)
• Output via NCDatasets.jl, remove NetCDF.jl deps (#384) (@milankl)
• Pretty printing for structs (#385) (@milankl)
• Model setups documented (#386) (@milankl)
• Land-sea mask (#389) (@milankl)
• Bug: First NetCDF time step is always 2000-01-01 (#390) (@milankl)
• Coriolis and div,curl,laplace convience functions (#392) (@milankl)
• Accumulate vor/div tendencies (#393) (@milankl)
• Ocean/Land for prognostic variables added (#395) (@milankl)
• CompatHelper: bump compat for CUDA to 5, (keep existing compat) (#396) (@milankl)
• Documentation: Extending SpeedyWeather.jl (#397) (@milankl)
• CompatHelper: bump compat for FastGaussQuadrature to 1, (keep existin… (#398) (@milankl)
• Surface fluxes of heat, moisture and momentum: Land and ocean seasonal climatology (#399) (@milankl)
• CompatHelper: bump compat for NCDatasets to 0.13, (keep existing compat) (#401) (@milankl)
• Soil moisture and vegetation (#403) (@milankl)
• Overhauled initial conditions for humidity (#404) (@milankl)
• Output cloud top [Pa], condensation simplified (#405) (@milankl)
• NetCDF output with BFloat16 (#407) (@milankl)
• plot(::LowerTriangularMatrix) (#408) (@milankl)
• Simplify default vertical coordinate spacing to equi-distant with sigma (#409) (@milankl)
• Convection (#414) (@milankl)
• Fix load_trajectory (#415) (@maximilian-gelbrecht)
• Output_dt in leapfrog time stepping and some adjustments for using Dates (#418) (@maximilian-gelbrecht)
• Bump to v0.7 (#419) (@milankl)

Closed issues:

• References for the dynamical core (#45)
• Use logging infrastructure for feedback messages (#68)
• Number format-flexibility (#137)
• Forcing and climatology in the shallow water system (#151)
• Liniting (#220)
• 16 bit model (#375)
• divergence! should set last row to zero (#382)
• plotting error with Float32sr spectralgrid! (#388)
• Shallow water run (#391)
• Barotropic vorticity model: Stochastic stirring (#394)
• run BarotropicModel T21 with BFloat16 and output (#406)
• low precision stochastic rounding (#411)
• Output time axis: option to adhere to output_dt exactly (#416)

v0.6.0

SpeedyWeather v0.6.0

Diff since v0.5.0

Closed issues:

• 16-bit FFT (#31)
• Expanding the Documentation (#263)
• Cannot run example on non-GPU system (#282)
• Windows permssions problem (#285)
• Precompilation warnings? (#296)
• Away from monolithic run_speedy()? (#320)
• CI runs on latest Julia release -- should we add more? (#325)
• Query about computational resources (#342)
• CI test on supported Julia versions? (#359)
• Precompilation errors of IrrationalConstants dependency (#366)
• SpectralGrid not defined in v0.5 (#367)

Merged pull requests:

• New SpectralGrid, Model, initialize!, simulation, run! structure (#327) (@milankl)
• Add clarification for SWE variables (#332) (@navidcy)
• Update README.md (#333) (@milankl)
• RingGrids and LowerTriangularMatrices docs (#335) (@milankl)
• remove Model from SpectralGrid (#336) (@milankl)
• Update README.md (#337) (@milankl)
• SpeedyCondensation implemented (#338) (@milankl)
• Update README.md (#339) (@milankl)
• NetCDF output documented (#340) (@milankl)
• Barotropic vorticity equation algorithm described (#341) (@milankl)
• barotropic, shallowwater test cases (#343) (@milankl)
• absolute paths docs img (#344) (@milankl)
• Run examples and produce output with every Docs built (#345) (@navidcy)
• Plot ::AbstractGrid as Unicode heatmap (#346) (@milankl)
• Barotropic, shallow water, and some primitive model documentation (#348) (@milankl)
• Update README.md with logo (#349) (@milankl)
• Fix typos in docs (#351) (@pitmonticone)
• Fix typos in mk/docs (#352) (@pitmonticone)
• Move clock to prognostic variables (#353) (@milankl)
• plot small grids without spaces (#354) (@milankl)
• Non-adaptive implicit: temp_profile in implicit only (#355) (@milankl)
• SpectralTransform for square LowerTriMats too (#356) (@milankl)
• CompatHelper: bump compat for KernelAbstractions to 0.9, (keep existi… (#357) (@milankl)
• Support KernelAbstractions 0.9 (#358) (@vchuravy)
• Other video for primitive (#360) (@milankl)
• CI tests on Julia 1.8, 1.9 + test on Julia nightly every week (#361) (@milankl)
• Different vertical advection schemes (#362) (@simone-silvestri)
• SpeedyTransforms documentation (#363) (@milankl)
• Increase test tolerance (#364) (@milankl)
• Primitive equation documentation (#365) (@milankl)
• Bugfix in vertical advection (#368) (@simone-silvestri)
• Speedstring precompilation warning (#369) (@milankl)
• Full and octahedral Gaussian grid documented (#371) (@milankl)
• get_truncation(::AbstractGrid) (#373) (@milankl)
• bump to v0.6 (#374) (@milankl)

v0.5.0

SpeedyWeather v0.5.0

Diff since v0.4.0

Closed issues:

• Parallelism in the vertical (#20)
• Pretty printing (#57)
• Horizontal domain decomposition for parametrizations (#83)
• Overhaul approach to physical constants and model parameters (#86)
• Consistency between NetCDF output grid and internal grid? (#146)
• OctahedralGaussianGrid not defined (#168)
• Variable initialisation (#170)
• Inconsistency of pressure variable in convection parametrizations (#171)
• Use PsychroLib for psychrometric calculations (#172)
• Precision of Time Output in NetCDF Files (#180)
• Move to SpeedyWeather orga (#182)
• Move parameterisations into folder (#183)
• Discuss general API (#184)
• Solution struct / return the Output struct (#185)
• Pre-compilation warnings (#194)
• Gradients in spectral space ref in Docs/Dynamical Core is broken (#203)
• Merging strategy (#214)
• Abstraction, type-hierarchy and modularity (#222)
• Not more than 70 vertical levels (#228)
• Outsourcing packages (#231)
• Incompatible with Julia 1.7? (#232)
• Unable to open output files using NCDatasets.jl (#236)
• First output timestep is < 6 hours. (#237)
• semi-implicit corrections (#252)
• Linearize virtual temperature for geopotential? (dynamics only) (#254)
• Renaming in Prognostic/DiagnosticVariables (#255)
• Crazy temperatures: Vertical advection bug? (#257)
• Output time precision (again) (#266)
• Vertical advection instability? (#271)
• Not thread-safe / bit reproducible ?! (#272)
• Missing (-1)^{n+1} factor from hyperdiffusion term (#286)
• Greenland whole column instability at T255 (#289)
• Broken precompilation on Linux? (#294)
• Temperature profiles, forcing vs implicit (#299)
• Power spectrum (#304)
• Diffusion scaling (#306)
• Vertical diffusion (#309)
• Topography smoothing (#310)
• Static energy diffusion (#311)

Merged pull requests:

• Add shortwave radiation parametrization (#169) (@dmey)
• Adapt functions (#173) (@katharinamaetschke)
• CompatHelper: bump compat for FastGaussQuadrature to 0.5, (keep existing compat) (#174) (@github-actions[bot])
• run_speedy!(progn,diagn,model) (#175) (@milankl)
• Use BarotropicModel instead of :barotropic etc (#176) (@milankl)
• Add longwave radiation parametrization (#177) (@dmey)
• Update copyright and licensing information (#179) (@dmey)
• allocate arrays filled with nans (#181) (@milankl)
• Output Time Int64 and Custom Run_Id (#186) (@maximilian-gelbrecht)
• Adapt functions DefineDiffusion, DefineImplicit and Geometry (#187) (@katharinamaetschke)
• Geopotential calculation (#188) (@milankl)
• Surface pressure tendency (#189) (@milankl)
• Vertical velocity dsigma/dt (#191) (@milankl)
• Keep GPU branch up-to-date with Main (#193) (@maximilian-gelbrecht)
• add_tendencies! updated to LowerTriangularMatrix (#195) (@milankl)
• Bernoulli potential for PrimitiveEquation (#196) (@milankl)
• Virtual temperature calculation (#197) (@milankl)
• Vertical advection of u,v + tendencies (vor, pres grads) (#198) (@milankl)
• Fix link to doc in README.md (#200) (@dmey)
• Fix typo (#202) (@navidcy)
• -Dbar in spectral; a,b work arrays; humidity advection; vorticity_flux_divcurl! with flags (#204) (@milankl)
• Temperature equation and primitive equation time stepping (#205) (@milankl)
• temp, pres initial conditions at rest (#206) (@milankl)
• mountain on/off/scale as parameter (#207) (@milankl)
• test ∇×∇=0 and ∇⋅∇=∇² (#208) (@milankl)
• horizontal_diffusion! generalised to ::ModelSetup (#209) (@milankl)
• Reformulated temperature equation (#210) (@milankl)
• Overhauled vertical advection (#211) (@milankl)
• Interpolation: AbstractGrid -> arbitrary grid (#212) (@milankl)
• In-place and more efficient eachring computation (#213) (@milankl)
• add colorbar to unicodeplots (#215) (@milankl)
• typo in vertical advection (#216) (@milankl)
• Parameters{Model<:ModelSetup} and orography abstracted (#217) (@milankl)
• Add mini development notes (#221) (@dmey)
• ZonalRidge orography added, Geometry with lond,latd (#223) (@milankl)
• u,v_grid instead of U,V_grid; /coslat in spectrans (#224) (@milankl)
• interpolate, interpolate! between grids (#225) (@milankl)
• NetCDF output with interpolator (#226) (@milankl)
• Obtain n_stratosphere_levels from default parameter sigma_tropopause (#227) (@milankl)
• add convenience interpolate method, show ring info for grids (#229) (@milankl)
• InitialConditions abstracted (#230) (@milankl)
• Scaling centralised, output on adjustable grid sizes (#233) (@milankl)
• Rename to OctaHEALPixGrid (#234) (@milankl)
• started grid documentation (#235) (@milankl)
• Adapt docs to SpeedyWeather orga (#238) (@milankl)
• Galewsky 2004 initial conditions for shallow water (#239) (@milankl)
• update @ref in docs (#240) (@milankl)
• restructure into folders and submodules (#241) (@milankl)
• grids comparison.png link corrected (#243) (@milankl)
• Update README.md (#244) (@milankl)
• New normalization for automatic sigma levels (#245) (@milankl)
• remove callside @inline as this requires 1.8 (#246) (@milankl)
• Galewsky init conditions modifiable in default params (#247) (@milankl)
• CompatHelper: bump compat for CUDA to 4, (keep existing compat) (#248) (@milankl)
• Jablonowski and Williamson initial conditions (#249) (@milankl)
• JW06 pressure constant (#250) (@milankl)
• Semi-implicit corrections for primitive equations (#251) (@milankl)
• Update README.md (#253) (@milankl)
• Primitive equation dry core bughunt (#256) (@milankl)
• Utility function load_trajectory added (#258) (@maximilian-gelbrecht)
• Use Temporary Files for Test Output (#261) (@white-alistair)
• copy! for PrognosticVariables (#262) (@maximilian-gelbrecht)
• Multi-threading added (#264) (@milankl)
• Boundary layer scheme from Held and Suarez (#269) (@milankl)
• Held Suarez temperature forcing (#270) (@milankl)
• Update README.md (#273) (@milankl)
• Make default RNG seed deterministic (#274) (@white-alistair)
• Reduce memory: no U,V,bernoulli in DiagnVariables (#275) (@milankl)
• Shorten implicit geopotential k:nlev (#276) (@milankl)
• Planet abstracted, Earth <: Planet (#277) (@milankl)
• Hyper diffusion overhauled (#278) (@milankl)
• primitive equation video in readme (#279) (@milankl)
• TemperatureRelaxation, BoundaryLayer type stable (#280) (@milankl)
• Merge main into mk/parameterizations (#281) (@milankl)
• Missing (-1)^{n+1} factor from hyperdiffusion term (#283) (@navidcy)
• Add spaces after commas (#284) (@navidcy)
• restructure PrognosticVariables (#287) (@milankl)
• Docs for Parameters (#288) (@navidcy)
• Dealiasing parameter for quad,cub truncation (#290) (@milankl)
• Better docs rendering (#291) (@navidcy)
• Diffusion tapering for stratosphere (#292) (@milankl)
• Fix typo in docs: julia v1.78 -> v1.8 (#293) (@navidcy)
• Bump up julia requirement to v1.8 (#295) (@navidcy)
• New stratosphere diffusion defaults (#298) (@milankl)
• Progress.txt output with speed and ETA (#301) (@milankl)
• Temperature relaxation towards Jablonowski's profile (#302) (@milankl)
• new time step scaling following Jablonowski (#303) (@milankl)
• ETA and speedstring in progress.txt got lost (#305) (@milankl)
• Power spectrum analysis (#307) (@milankl)
• HyperDiffusion and VerticalDiffusion (#308) (@milankl)
• @unpack + import Paramters removed (#312) (@milankl)
• Parameterization fluxes and dry static energy diffusion (#313) (@milankl)
• docs minor stuff (#314) (@milankl)
• Truncate orography always to smooth T85 (#315) (@milankl)
• Keepbits per variable (#316) (@milankl)
• Float32, PrimitiveDryCore, OctaGauss new defaults (#317) (@milankl)
• Avoid type instability in fluxes_to_tendencies! (#318) (@milankl)
• Minor things (#319) (@milankl)
• Some docs improvements (#321) (@navidcy)
• Update CompatHelper.yml (#322) (@navidcy)
• Update TagBot.yml (#324) (@navidcy)
• Add compat entry for FLoops (#326) (@navidcy)
• spectral_truncation/interpolation type stable (#328) (@milankl)
• 1st order upwind scheme for vertical advection (#330) (@milankl)
• bump to v0.5 (#331) (@milankl)

v0.4.0

SpeedyWeather v0.4.0

Diff since v0.3.0

Closed issues:

• Prepare input data (#40)
• Float32 vs Float64 performance (#106)
• A new grid for SpeedyWeather.jl? (#112)
• Shortening the Legendre Transform over m (#131)
• Output grids (#134)
• Broadcast operations with LowerTriangularMatrix (#135)
• Inverse Laplacian (#141)
• Longitude offset rotation (#159)
• @simd in Legendre Transform? (#162)
• copyto! function of LowerTriangularMatrix (#165)

Merged pull requests:

• CompatHelper: bump compat for CUDAKernels to 0.4, (keep existing compat) (#119) (@github-actions[bot])
• CompatHelper: bump compat for KernelAbstractions to 0.8, (keep existing compat) (#120) (@github-actions[bot])
• AbstractGrids towards HEALPix or Octahedral (#122) (@milankl)
• Parametrizations with ColumnVariables (#123) (@milankl)
• Grid abstractions +indexing, SpecTrans performance (#124) (@milankl)
• LowerTriangularMatrix extended (#125) (@milankl)
• Grid-flexible spectral transform (#127) (@milankl)
• Convection (#128) (@white-alistair)
• Adapt functions for diagnostic_variables.jl (#130) (@katharinamaetschke)
• Grid indexing (#132) (@milankl)
• Update README.md (#133) (@milankl)
• Float32 spectral transform (#136) (@milankl)
• add OctahedralClenshawGrid + some refactoring of src/grids.jl (#138) (@hottad)
• Initialize sigma levels manually (#139) (@maximilian-gelbrecht)
• Grid to matrix for output (#140) (@milankl)
• Inverse Laplace ∇⁻²! via kernel in ∇²! (#142) (@milankl)
• Adapt structures for diagnostic variables and prognostic variables (#143) (@katharinamaetschke)
• Interface relaxation with seasonal cycle (#144) (@milankl)
• Shallow water model and OctahedralClenshawGrid default (#145) (@milankl)
• Add kernelabstractions_adtests CI (#147) (@maximilian-gelbrecht)
• Keep GPU branch up to date (#148) (@maximilian-gelbrecht)
• FullHEALPixGrid (#150) (@milankl)
• Update CI.yml (#152) (@maximilian-gelbrecht)
• set_vars! function to easily set variables in PrognosticVariables (#154) (@maximilian-gelbrecht)
• fix get_var for pressure (#155) (@maximilian-gelbrecht)
• HEALPix4Grid and FullHEALPix4Grid implementation (#156) (@hottad)
• Lon offset rotation enabled (#160) (@milankl)
• Healpix.jl dep removed (#163) (@milankl)
• LowerTriangularMatrix Broadcast fix (#164) (@maximilian-gelbrecht)
• Legendre shortcut: truncate loop over m (#166) (@milankl)
• No [l,m] access to LTM in gradients (#167) (@milankl)

v0.3.0

SpeedyWeather v0.3.0

Diff since v0.2.1

Closed issues:

• Pre-allocate grid-point pressure values and use consistent naming (#91)
• Rotating spherical harmonics gif not showing up (#96)
• Initial conditions for shallow water (#98)
• Float64 run_speedy doesn't output correctly (#102)
• Float32 high resolution spectral transform (#104)
• LowerTriangularMatrix for spectral coefficients (#111)

Merged pull requests:

• make scale_coslat! on output type flexible (#103) (@milankl)
• Orography Legendre precomputation in Float64 (#105) (@milankl)
• Take exponential of pres_grid for parametrizations (#107) (@white-alistair)
• Renaming for consistency, UV_from_vor! added (#108) (@milankl)
• Docs: sph harmonics + derivates updated (#109) (@milankl)
• LowerTriangularMatrix implemented (#110) (@milankl)
• write restart file, restart from it (#113) (@milankl)
• CompatHelper: add new compat entry for JLD2 at version 0.4, (keep existing compat) (#114) (@github-actions[bot])
• CompatHelper: add new compat entry for CodecZlib at version 0.7, (keep existing compat) (#115) (@github-actions[bot])
• fibonacci -> triangle number (#116) (@milankl)
• LowerTriangularMatrix in PrognVars, DiagnVars +restructured (#117) (@milankl)
• Basics for KernelAbstractions / GPU (#118) (@maximilian-gelbrecht)

v0.2.1

SpeedyWeather v0.2.1

Diff since v0.2.0

Closed issues:

• Get run id fails if 000?.xyz exists (#97)

Merged pull requests:

• run???? folder conflict (#99) (@milankl)
• div,curl corrected (#100) (@milankl)
• bump to v0.2.1 (#101) (@milankl)

v0.2.0

SpeedyWeather v0.2.0

Diff since v0.1.1

Closed issues:

• Spectral gradient leakage? (#63)
• Spectral gradient unit test (#75)
• Factory Methods for Testing (#84)

Merged pull requests:

• vor as unicodeplot, days/day speed shown (#80) (@milankl)
• Require Julia v1.7 (#81) (@white-alistair)
• Parametrization of Large-Scale Condensation (#82) (@white-alistair)
• Introduce ModelSetup distinction (#87) (@milankl)
• get u,v from vor and div in ShallowWaterModel (#88) (@milankl)
• More documentation (#89) (@milankl)
• Define methods for ShallowWaterModel (#92) (@milankl)
• CompatHelper: bump compat for UnicodePlots to 3, (keep existing compat) (#93) (@github-actions[bot])
• Semi-implicit time stepping (#94) (@milankl)
• bump to v0.2 (#95) (@milankl)