About running and extract the result

[tianlt]

Hi again,

I followed the jupyter example and found that there are different versions of function to run the VIA; via_wrapper, via.draw_trajectory_gams, or via.VIA etc. I have datasets and want to infer the trajectory using VIA just being doubt about which one suits the most?

Additionally, after running the via_wrapper there are several plots being generated. Is the one named pseudotime the main result that inferred from VIA? And how to save one of diagram(i.e. the pseudotime plot)?

Thank you in advance!

[ShobiStassen]

Hi,
If you check out the readthedocs Tutorials which have notebooks and videos, that should help you out. Perhaps a good idea to update to latest version of Via on pip too

[Starlitnightly]

Hi,
You can use adata.obs['pt']=v0.single_cell_pt_markov to extract the pseudotime calculated by VIA.