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Releases: SciML/SciMLBenchmarks.jl

v0.1.3

17 Jul 00:43
4bd7ce4
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SciMLBenchmarks v0.1.3

Diff since v0.1.2

v0.1.2

16 Jul 23:41
5a41950
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SciMLBenchmarks v0.1.2

Diff since v0.1.1

Closed issues:

  • PDE notebooks need to be rerun or re-linked (#53)
  • No recompilation of Stan models in Bayesian benchmarks (#103)
  • Make a Brusselator benchmark (#107)
  • Re-run parameter estimation benchmarks (#129)
  • Fix automated notebooks (#310)
  • PINN solver benchmarks are broken (#353)
  • Dynamical ODE benchmark HTML is too big (#455)
  • Errors in precompilation (#469)
  • Fixing the Stan binary for the Bayesian estimation (#484)
  • Ensure Stan defaults used in benchmarks (#489)
  • Stan and Turing.jl don't use the same HMC parameters (#492)
  • Stan and Turing.jl don't sample from the same posteriors for the Bayesian parameter estimation benchmarks (#493)
  • Newly added Gupta (bio) benchmarks links not working in the Readme (#498)

Merged pull requests:

  • update parameter_estimation (#362) (@ChrisRackauckas)
  • Jump benchmarks (#408) (@isaacsas)
  • Add MethodOfLines Benchmark (#425) (@xtalax)
  • bump nbody (#450) (@ChrisRackauckas)
  • bump adaptive sde (#451) (@ChrisRackauckas)
  • Use default names for algorithms in DDE benchmarks (#468) (@devmotion)
  • bump DynamicalODE (#470) (@ChrisRackauckas)
  • bump non-stiff SDE (#471) (@ChrisRackauckas)
  • change sigmoid to tanh in PINNs' benchmarks (#473) (@YichengDWu)
  • Bump Lotka-Volterra SDE (#474) (@ChrisRackauckas)
  • CompatHelper: add new compat entry for StanSample at version 6 for package BayesianInference, (keep existing compat) (#476) (@github-actions[bot])
  • CompatHelper: add new compat entry for DiffEqCallbacks at version 2 for package BayesianInference, (keep existing compat) (#477) (@github-actions[bot])
  • CompatHelper: add new compat entry for Turing at version 0.21 for package BayesianInference, (keep existing compat) (#478) (@github-actions[bot])
  • Attempt another Bayesian inference build (#485) (@ChrisRackauckas)
  • Fix PDE definition for Nernst-Planck (#486) (@ChrisRackauckas)
  • Add Gupta model benchmarks (#487) (@TorkelE)
  • badges (#488) (@ArnoStrouwen)
  • MassInstallAction: Install the Invalidations workflow on this repository (#490) (@devmotion)
  • Add extrapolation benchmarks to new bio models (#491) (@utkarsh530)
  • Try using a static direct Turing.jl version (#495) (@ChrisRackauckas)
  • change adapt_delta to fit with Turing.jl (#497) (@EvoArt)
  • bump a few packages (#499) (@ChrisRackauckas)
  • Fix the Stan delta choice to match Turing (#500) (@ChrisRackauckas)
  • CompatHelper: add new compat entry for StaticArrays at version 1 for package BayesianInference, (keep existing compat) (#501) (@github-actions[bot])
  • Update gupta benchmarks (#502) (@TorkelE)
  • update to v1.8 and update Bio to have nonstiff stuff (#504) (@ChrisRackauckas)
  • Update stiff ODE benchmarks for Rodas5P and specializations (#505) (@ChrisRackauckas)
  • update non-stiff ODEs to have static arrays and full specialization (#506) (@ChrisRackauckas)
  • CompatHelper: add new compat entry for StaticArrays at version 1 for package NonStiffODE, (keep existing compat) (#507) (@github-actions[bot])
  • Fix up Brusselator benchmark (#508) (@ChrisRackauckas)
  • Create static versions of the problems for small stiff (#509) (@ChrisRackauckas)
  • simplify static stiff (#510) (@ChrisRackauckas)
  • Expand bruss benchmarks (#511) (@ChrisRackauckas)
  • CompatHelper: add new compat entry for AlgebraicMultigrid at version 0.5 for package StiffODE, (keep existing compat) (#512) (@github-actions[bot])
  • CompatHelper: add new compat entry for Symbolics at version 4 for package StiffODE, (keep existing compat) (#513) (@github-actions[bot])
  • CompatHelper: add new compat entry for IncompleteLU at version 0.2 for package StiffODE, (keep existing compat) (#514) (@github-actions[bot])
  • CompatHelper: add new compat entry for ModelingToolkit at version 8 for package StiffODE, (keep existing compat) (#515) (@github-actions[bot])
  • Update problem library for StiffSDE (#516) (@ChrisRackauckas)
  • update stiff dde (#517) (@ChrisRackauckas)
  • update nonstiff sde (#518) (@ChrisRackauckas)
  • update nonstiff dde (#519) (@ChrisRackauckas)
  • update to jump problem library (#520) (@ChrisRackauckas)
  • bump pde (#521) (@ChrisRackauckas)
  • add fast bruss implemenation (#522) (@ChrisRackauckas)
  • bump multisite and multistate (#523) (@ChrisRackauckas)
  • Bump fceri (#524) (@ChrisRackauckas)
  • CompatHelper: add new compat entry for LinearSolve at version 1 for package Bio, (keep existing compat) (#525) (@github-actions[bot])
  • Adjust some of the new bio benchmarks to stop around steady state time (#526) (@ChrisRackauckas)
  • Update Bio WP diagrams (#527) (@TorkelE)
  • .buildkite: run_benchmark: use v1 of coppermind plugin (#529) (@thazhemadam)
  • Try new Bio build (#533) (@ChrisRackauckas)
  • Fix typo in BCR (#534) (@ChrisRackauckas)
  • full specialize in Bidkhori2012 (#535) (@ChrisRackauckas)
  • remove extrapolation from sparse (#536) (@ChrisRackauckas)
  • Fix preconditioner definitions (#537) (@ChrisRackauckas)
  • Bump DynamicalODE (#539) (@ChrisRackauckas)
  • Bump Bayes (#540) (@ChrisRackauckas)
  • MOL move to analytic errors for burgers (#541) (@xtalax)
  • CompatHelper: add new compat entry for MethodOfLines at version 0.7 for package MOLPDE, (keep existing compat) (#542) (@github-actions[bot])
  • CompatHelper: add new compat entry for ModelingToolkit at version 8 for package MOLPDE, (keep existing compat) (#543) (@github-actions[bot])
  • CompatHelper: add new compat entry for DomainSets at version 0.6 for package MOLPDE, (keep existing compat) (#544) (@github-actions[bot])
  • CompatHelper: add new compat entry for Sundials at version 4 for package MethodOfLinesPDE, (keep existing compat) (#545) (@github-actions[bot])
  • CompatHelper: add new compat entry for OrdinaryDiffEq at version 6 for package MethodOfLinesPDE, (keep existing compat) (#546) (@github-actions[bot])
  • CompatHelper: add new compat entry for LinearSolve at version 1 for package MethodOfLinesPDE, (keep existing compat) (#547) (@github-actions[bot])
  • CompatHelper: add new compat entry for MethodOfLines at version 0.7 for package StiffODE, (keep existing compat) (#553) (@github-actions[bot])
  • CompatHelper: add new compat entry for DomainSets at version 0.6 for package StiffODE, (keep existing compat) (#554) (@github-actions[bot])
  • Bump stiff Bio models (#558) (@ChrisRackauckas)
  • Update buildkite tags and re-sign treehashes (#559) (@thazhemadam)
  • Adds Coevolve aggregator to the Jumps benchmark suite (#565) (@gzagatti)
  • ci: fix encrypted repo_key and sign treehashes (#568) (@thazhemadam)
  • Disable test checking for .html (#569) (@ChrisRackauckas)
  • Fullspecialize on the Bio benchmarks (#572) (@ChrisRackauckas)
  • update burgers mol package versions (should be working now) (#574) (@xtalax)
  • add BCR benchmark summary figure (#577) (@TorkelE)
  • improve Bio benchmarks (#581) (@TorkelE)
  • Automatic benchmarking of various MOL discretizations across all of PDESystemLibrary (#583) (@xtalax)
  • Adds Multivariate Hawkes benchmark. (#584) (@gzagatti)
  • MultivariateHawkes: Do not run Python benchmark in the cloud (#585) (@gzagatti)
  • enable dependabot for GitHub actions (#591) (@ranocha)
  • Bump actions/checkout from 2 to 3 (#592) (@dependabot[bot])
  • CompatHelper: bump compat for LinearSolve to 2 for package Bio, (keep existing compat) (#600) (@github-actions[bot])
  • CompatHelper: bump compat for LinearSolve to 2 for package MethodOfLinesPDE, (keep existing compat) (#601) (@github-actions[bot])
  • CompatHelper: bump compat for LinearSolve to 2 for package StiffODE, (keep existing compat) (#602) (@github-actions[bot])

v0.1.1

11 Aug 22:35
d24fd9f
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SciMLBenchmarks v0.1.1

Diff since v0.1.0

Closed issues:

  • Interesting benchmark problems (#35)
  • Missing BCR (1122) benchmark page (#185)
  • Fix DynamicalODE Benchmarks (#261)
  • Fix Jumps Benchmarks (#262)
  • Fix VanDerPol and ROBER notebooks (#325)
  • Scale which benchmarking has been done? (#399)
  • Jump process benchmarks are old (#456)

Merged pull requests:

  • update DynamicalODE benchmarks (#229) (@ChrisRackauckas)
  • update Jumps benchmarks (#230) (@ChrisRackauckas)
  • fix liquid argon (#245) (@ChrisRackauckas)
  • bump parameter estimation benchmarks (#246) (@ChrisRackauckas)
  • bump non-stiff SDE benchmarks (#247) (@ChrisRackauckas)
  • Update BCR.jmd (#249) (@ChrisRackauckas)
  • CompatHelper: add new compat entry for "SciMLBenchmarks" at version "0.1" for package Bio (#251) (@github-actions[bot])
  • CompatHelper: add new compat entry for "SciMLBenchmarks" at version "0.1" for package NBodySimulator (#252) (@github-actions[bot])
  • CompatHelper: add new compat entry for "SciMLBenchmarks" at version "0.1" for package NonStiffDDE (#253) (@github-actions[bot])
  • CompatHelper: add new compat entry for "SciMLBenchmarks" at version "0.1" for package NonStiffODE (#254) (@github-actions[bot])
  • CompatHelper: add new compat entry for "SciMLBenchmarks" at version "0.1" for package NonStiffSDE (#255) (@github-actions[bot])
  • CompatHelper: add new compat entry for "SciMLBenchmarks" at version "0.1" for package ParameterEstimation (#256) (@github-actions[bot])
  • CompatHelper: add new compat entry for "SciMLBenchmarks" at version "0.1" for package StiffDDE (#257) (@github-actions[bot])
  • CompatHelper: add new compat entry for "SciMLBenchmarks" at version "0.1" for package StiffODE (#258) (@github-actions[bot])
  • CompatHelper: add new compat entry for "SciMLBenchmarks" at version "0.1" for package StiffSDE (#259) (@github-actions[bot])
  • CompatHelper: add new compat entry for "SciMLBenchmarks" at version "0.1" for package Testing (#260) (@github-actions[bot])
  • CompatHelper: add new compat entry for "SciMLBenchmarks" at version "0.1" for package AdaptiveSDE (#263) (@github-actions[bot])
  • CompatHelper: add new compat entry for "SciMLBenchmarks" at version "0.1" for package DynamicalODE (#264) (@github-actions[bot])
  • CompatHelper: add new compat entry for "SciMLBenchmarks" at version "0.1" for package AdaptiveSDE (#265) (@github-actions[bot])
  • CompatHelper: add new compat entry for "SciMLBenchmarks" at version "0.1" for package Jumps (#266) (@github-actions[bot])
  • CompatHelper: add new compat entry for "SciMLBenchmarks" at version "0.1" for package DynamicalODE (#267) (@github-actions[bot])
  • CompatHelper: add new compat entry for "SciMLBenchmarks" at version "0.1" for package MOLPDE (#268) (@github-actions[bot])
  • CompatHelper: add new compat entry for "SciMLBenchmarks" at version "0.1" for package Jumps (#269) (@github-actions[bot])
  • CompatHelper: add new compat entry for "SciMLBenchmarks" at version "0.1" for package MultiLanguage (#270) (@github-actions[bot])
  • CompatHelper: bump compat for "BlackBoxOptim" to "0.6" for package ParameterEstimation (#272) (@github-actions[bot])
  • CompatHelper: bump compat for "BlackBoxOptim" to "0.6" for package ParameterEstimation (#273) (@github-actions[bot])
  • update Jump benchmarks to use Catalyst.jl (#275) (@ChrisRackauckas)
  • CompatHelper: bump compat for "BenchmarkTools" to "1.0" for package NBodySimulator (#276) (@github-actions[bot])
  • CompatHelper: bump compat for "BenchmarkTools" to "1.0" for package ParameterEstimation (#277) (@github-actions[bot])
  • Fix DynamicalODE Benchmarks (#278) (@SebastianM-C)
  • update to add QNDF (#280) (@ChrisRackauckas)
  • update BCR benchmarks (#281) (@ChrisRackauckas)
  • Stop the autodiff explosion in BCR (#283) (@ChrisRackauckas)
  • Update 2 of the Jumps benchmarks to use Catalyst (#286) (@Gregliest)
  • Update README instructions. (#287) (@Gregliest)
  • [WIP] Fix Diffusion benchmark. (#288) (@Gregliest)
  • Fix Mendes Benchmark (#289) (@Gregliest)
  • CompatHelper: add new compat entry for "ModelingToolkit" at version "5" for package Jumps (#290) (@github-actions[bot])
  • CompatHelper: bump compat for "DiffEqJump" to "7" for package Jumps (#292) (@github-actions[bot])
  • CompatHelper: bump compat for "Catalyst" to "7" for package Bio (#293) (@github-actions[bot])
  • CompatHelper: bump compat for "Catalyst" to "7" for package Jumps (#294) (@github-actions[bot])
  • CompatHelper: bump compat for "ReactionNetworkImporters" to "0.9" for package Bio (#295) (@github-actions[bot])
  • CompatHelper: bump compat for "ModelingToolkit" to "6" for package Bio (#296) (@github-actions[bot])
  • CompatHelper: bump compat for "ModelingToolkit" to "6" for package Jumps (#297) (@github-actions[bot])
  • CompatHelper: bump compat for ReactionNetworkImporters to
    0.10 for package Bio, (keep existing compat) (#299) (@github-actions[bot])
  • CompatHelper: bump compat for Catalyst to
    8 for package Bio, (keep existing compat) (#300) (@github-actions[bot])
  • CompatHelper: bump compat for Catalyst to
    8 for package Jumps, (keep existing compat) (#301) (@github-actions[bot])
  • CompatHelper: bump compat for Catalyst to 8 for package Bio, (keep existing compat) (#302) (@github-actions[bot])
  • CompatHelper: bump compat for ReactionNetworkImporters to 0.10 for package Bio, (keep existing compat) (#303) (@github-actions[bot])
  • CompatHelper: bump compat for Catalyst to 8 for package Jumps, (keep existing compat) (#304) (@github-actions[bot])
  • CompatHelper: bump compat for ReactionNetworkImporters to 0.11 for package Bio, (keep existing compat) (#305) (@github-actions[bot])
  • CompatHelper: bump compat for Catalyst to 9 for package Bio, (keep existing compat) (#306) (@github-actions[bot])
  • CompatHelper: bump compat for Catalyst to 9 for package Jumps, (keep existing compat) (#307) (@github-actions[bot])
  • update BCR and its manifest (#308) (@isaacsas)
  • Remove the pdf and notebook defaults (#311) (@ChrisRackauckas)
  • CompatHelper: bump compat for Catalyst to 10 for package Jumps, (keep existing compat) (#313) (@github-actions[bot])
  • CompatHelper: bump compat for ModelingToolkit to 7 for package Bio, (keep existing compat) (#315) (@github-actions[bot])
  • CompatHelper: bump compat for ModelingToolkit to 7 for package Jumps, (keep existing compat) (#316) (@github-actions[bot])
  • CompatHelper: bump compat for DiffEqJump to 8 for package Jumps, (keep existing compat) (#317) (@github-actions[bot])
  • CompatHelper: bump compat for ReactionNetworkImporters to 0.12 for package Bio, (keep existing compat) (#318) (@github-actions[bot])
  • Update bcr for defaults (#320) (@isaacsas)
  • Add FBDF to the benchmarks (#321) (@YingboMa)
  • Move CI to juliaecosystem (#322) (@staticfloat)
  • No pdf (#323) (@ChrisRackauckas)
  • fix test, again (#324) (@ChrisRackauckas)
  • Fix VanderPol and Rober benchmark (#326) (@JunpengGao233)
  • Add NeuralPDE Paper Benchmarks (#327) (@ChrisRackauckas)
  • CompatHelper: add new compat entry for QuasiMonteCarlo at version 0.2 for package PINNErrorsVsTime, (keep existing compat) (#328) (@github-actions[bot])
  • CompatHelper: add new compat entry for Cuba at version 2 for package PINNErrorsVsTime, (keep existing compat) (#329) (@github-actions[bot])
  • CompatHelper: add new compat entry for Optim at version 1 for package PINNErrorsVsTime, (keep existing compat) (#330) (@github-actions[bot])
  • CompatHelper: add new compat entry for DiffEqFlux at version 1 for package PINNErrorsVsTime, (keep existing compat) (#331) (@github-actions[bot])
  • CompatHelper: add new compat entry for NeuralPDE at version 4 for package PINNErrorsVsTime, (keep existing compat) (#332) (@github-actions[bot])
  • CompatHelper: add new compat entry for Quadrature at version 1 for package PINNErrorsVsTime, (keep existing compat) (#333) (@github-actions[bot])
  • CompatHelper: add new compat entry for Flux at version 0.12 for package PINNErrorsVsTime, (keep existing compat) (#334) (@github-actions[bot])
  • CompatHelper: add new compat entry for ModelingToolkit at version 7 for package PINNErrorsVsTime, (keep existing compat) (#335) (@github-actions[bot])
  • CompatHelper: add new compat entry for Cubature at version 1 for package PINNErrorsVsTime, (keep existing compat) (#336) (@github-actions[bot])
  • CompatHelper: add new compat entry for GalacticOptim at version 2 for package PINNErrorsVsTime, (keep existing compat) (#337) (@github-actions[bot])
  • CompatHelper: add new compat entry for NeuralPDE at version 4 for package PINNOptimizers, (keep existing compat) (#338) (@github-actions[bot])
  • CompatHelper: add new compat entry for Plots at version 1 for package PINNOptimizers, (keep existing compat) (#339) (@github-actions[bot])
  • CompatHelper: add new compat entry for GalacticOptim at version 2 for package PINNOptimizers, (keep existing compat) (#340) (@github-actions[bot])
  • CompatHelper: add new compat entry for DiffEqFlux at version 1 for package PINNOptimizers, (keep existing compat) (#341) (@github-actions[bot])
  • CompatHelper: add new compat entry for Cubature at version 1 for package PINNOptimizers, (keep existing compat) (#342) (@github-actions[bot])
  • CompatHelper: add new compat entry for Cuba at version 2 for package PINNOptimizers, (keep existing compat) (#343) (@github-actions[bot])
  • CompatHelper: add new compat entry for ModelingToolkit at version 7 for package PINNOptimizers, (keep existing compat) (#344) (@github-actions[bot])
  • CompatHelper: add new compat entry for Optim at version 1 for package PINNOptimizers, (keep existing compat) (#345) (@github-actions[bot])
  • CompatHelper: add new compat entry for Quadrature at version 1 for package PINNOptimizers, (keep existing compat) (#346) (@github-actions[bot])
  • CompatHelper: add new compat entry for Flux at version 0.12 for package PINNOptimizers, (keep existing compat) (#347) (@github-actions[bot])
  • Fix a bunch of PINN benchmarks (#348) (@ChrisRackauckas)
  • CompatHelper...
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v0.1.0

15 May 03:24
943abec
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SciMLBenchmarks v0.1.0

Closed issues:

  • Pictures (#1)
  • Benchmarks for Dynamical ODEs (#2)
  • Benchmarks for DDEs (#3)
  • Benchmarks for stiff SDEs (#5)
  • Issue with DiffEqBase in LorenzParameter Estimation (#13)
  • Benchmarks for SSA/jump systems (#25)
  • Convert benchmarks to use Weave.jl (#29)
  • Benchmarks for ExpRK methods (#30)
  • Wheldon, Kirk, and Finlay (#33)
  • Regressions from v1.0 upgrade (#37)
  • Weak SDE estimation is currently broken (#40)
  • DiffEqBayesLorenz and DiffEqBayesLotkaVolterra need to be re-ran (#41)
  • Filament needs to be fixed (#42)
  • Jump equations need to run (#43)
  • Oval2 Timings need an update (#46)
  • BCR import location (#55)
  • Pleiades (#95)
  • Precompilation broken on julia 1.5 beta1 (#105)
  • Build log (#116)
  • Re-run stiff ODE benchmarks (#128)
  • Re-run DynamicalODE benchmarks (#131)
  • update BCR benchmark for Catalyst (#169)

Merged pull requests:

  • Add benchmarks of constant delay DDEs (#4) (@devmotion)
  • Add DynamicalODE (#7) (@SebastianM-C)
  • Update DDE benchmarks (#8) (@devmotion)
  • Fix DDE interpolation and add Rodas5 to QS (#9) (@devmotion)
  • Update DynamicalODE (#10) (@SebastianM-C)
  • Added notebooks for DiffEqBayes benchmarking (#11) (@Vaibhavdixit02)
  • Modifications to summary and update to new syntax (#12) (@Vaibhavdixit02)
  • DiffEqBayes Benchmarks for LV and Lorenz equation (#16) (@Vaibhavdixit02)
  • Use plot_chain for turing_inference (#18) (@Vaibhavdixit02)
  • Notebook for Lotka Volterra parameter estimation with optimisation methods (#19) (@Vaibhavdixit02)
  • Update the Readme summary and typo in Lorenz notebook (#20) (@Vaibhavdixit02)
  • FitzHugh-Nagumo Parameter estimation using optimization methods. (#21) (@Vaibhavdixit02)
  • Updates to Readme and some changes in LV notebook (#22) (@Vaibhavdixit02)
  • Added QuadDIRECT to the optimization methods benchmarks for parameter estimation (#23) (@Vaibhavdixit02)
  • jump benchmarks (#26) (@isaacsas)
  • RFC: Restructure benchmarks to use Weave instead of notebooks (#32) (@ChrisRackauckas)
  • Update parameter estimation benchmarks (#36) (@Vaibhavdixit02)
  • Add Project.toml (#38) (@asinghvi17)
  • Benchmark jmd files for ROCK2 and ROCK4 (#39) (@deeepeshthakur)
  • Updated the filament benchmark (#44) (@dextorious)
  • added four differential equations (#45) (@HH3117)
  • created the PDE folder (#48) (@HH3117)
  • add extrapolation methods (#49) (@saurabhkgp21)
  • Update DiffEqBayesLotkaVolterra.jl for breaking uncertainity/uncertainty typo (#50) (@jamesjscully)
  • BCR chemical reaction system benchmarks (#52) (@ChrisRackauckas)
  • Update jump benchmarks (#54) (@isaacsas)
  • CompatHelper: add new compat entry for "DataFrames" at version "0.19" (#57) (@github-actions[bot])
  • CompatHelper: add new compat entry for "RecursiveFactorization" at version "0.1" (#58) (@github-actions[bot])
  • CompatHelper: add new compat entry for "ReactionNetworkImporters" at version "0.1" (#59) (@github-actions[bot])
  • CompatHelper: add new compat entry for "IJulia" at version "1.20" (#60) (@github-actions[bot])
  • CompatHelper: add new compat entry for "BlackBoxOptim" at version "0.5" (#61) (@github-actions[bot])
  • CompatHelper: add new compat entry for "DiffEqDevTools" at version "2.15" (#62) (@github-actions[bot])
  • CompatHelper: add new compat entry for "ParameterizedFunctions" at version "4.2" (#63) (@github-actions[bot])
  • CompatHelper: add new compat entry for "DiffEqJump" at version "6.2" (#64) (@github-actions[bot])
  • CompatHelper: add new compat entry for "Weave" at version "0.9" (#65) (@github-actions[bot])
  • CompatHelper: add new compat entry for "ApproxFun" at version "0.11" (#66) (@github-actions[bot])
  • CompatHelper: add new compat entry for "ODEInterfaceDiffEq" at version "3.4" (#67) (@github-actions[bot])
  • CompatHelper: add new compat entry for "OrdinaryDiffEq" at version "5.23" (#68) (@github-actions[bot])
  • CompatHelper: add new compat entry for "ODEInterface" at version "0.4" (#69) (@github-actions[bot])
  • CompatHelper: add new compat entry for "ODE" at version "2.5" (#70) (@github-actions[bot])
  • CompatHelper: add new compat entry for "DiffEqProblemLibrary" at version "4.5" (#71) (@github-actions[bot])
  • CompatHelper: add new compat entry for "DiffEqUncertainty" at version "1.3" (#72) (@github-actions[bot])
  • CompatHelper: add new compat entry for "LSODA" at version "0.6" (#73) (@github-actions[bot])
  • CompatHelper: add new compat entry for "DiffEqBiological" at version "4.0" (#74) (@github-actions[bot])
  • CompatHelper: add new compat entry for "SteadyStateDiffEq" at version "1.5" (#75) (@github-actions[bot])
  • CompatHelper: add new compat entry for "Sundials" at version "3.8" (#76) (@github-actions[bot])
  • CompatHelper: add new compat entry for "NLopt" at version "0.5" (#77) (@github-actions[bot])
  • CompatHelper: add new compat entry for "DiffEqParamEstim" at version "1.8" (#78) (@github-actions[bot])
  • CompatHelper: add new compat entry for "Plots" at version "0.27" (#79) (@github-actions[bot])
  • CompatHelper: add new compat entry for "NLopt" at version "0.5" (#80) (@github-actions[bot])
  • Save all figures as SVG (#81) (@asinghvi17)
  • Default html to svg (#82) (@ChrisRackauckas)
  • CompatHelper: bump compat for "Plots" to "0.28" (#83) (@github-actions[bot])
  • CompatHelper: bump compat for "DataFrames" to "0.20" (#84) (@github-actions[bot])
  • Update BCR benchmark to use correct path (#85) (@isaacsas)
  • CompatHelper: add new compat entry for "DiffEqBase" at version "6.7" (#86) (@github-actions[bot])
  • CompatHelper: add new compat entry for "DifferentialEquations" at version "6.9" (#87) (@github-actions[bot])
  • CompatHelper: add new compat entry for "ParallelDataTransfer" at version "0.5" (#88) (@github-actions[bot])
  • Myb/noauto (#89) (@ChrisRackauckas)
  • CompatHelper: bump compat for "Plots" to "0.29" (#92) (@github-actions[bot])
  • Install TagBot as a GitHub Action (#93) (@JuliaTagBot)
  • CompatHelper: bump compat for "ParameterizedFunctions" to "5.0" (#94) (@github-actions[bot])
  • CompatHelper: bump compat for "Plots" to "1.0" (#96) (@github-actions[bot])
  • CompatHelper: bump compat for "Sundials" to "4.0" (#97) (@github-actions[bot])
  • Update DiffEqBayes benchmarks (#98) (@Vaibhavdixit02)
  • CompatHelper: add new compat entry for "DiffEqBayes" at version "2.9" (#99) (@github-actions[bot])
  • CompatHelper: bump compat for "DataFrames" to "0.21" (#100) (@github-actions[bot])
  • Use truncated instead of Truncated (#101) (@devmotion)
  • CompatHelper: bump compat for "NLopt" to "0.6" (#102) (@github-actions[bot])
  • Add NBodySimulator benchmarks (#106) (@SebastianM-C)
  • Rebuild benchmarks (#108) (@christopher-dG)
  • Move to separate projects (#109) (@christopher-dG)
  • CompatHelper: bump compat for "DiffEqNoiseProcess" to "5.0" for package AdaptiveSDE (#110) (@github-actions[bot])
  • CompatHelper: bump compat for "DiffEqMonteCarlo" to "1.0" for package AdaptiveSDE (#111) (@github-actions[bot])
  • CompatHelper: bump compat for "DiffEqNoiseProcess" to "5.0" for package StiffSDE (#112) (@github-actions[bot])
  • Rebuild StiffSDE/QuadraticStiffness.jmd (#114) (@github-actions[bot])
  • Activate project env (#115) (@christopher-dG)
  • Rebuild NonStiffODE/FitzhughNagumo_wpd.jmd, NonStiffODE/LotkaVolterra_wpd.jmd, NonStiffODE/Pleiades_wpd.jmd, NonStiffODE/RigidBody_wpd.jmd, NonStiffODE/ThreeBody_wpd.jmd, NonStiffODE/linear_wpd.jmd (#117) (@github-actions[bot])
  • Rebuild Jumps/Diffusion_CTRW.jmd, Jumps/Mendes_multistate_example.jmd, Jumps/NegFeedback_GeneExpr.jmd, Jumps/NegFeedback_GeneExpr_Marchetti.jmd (#119) (@github-actions[bot])
  • Rebuild StiffSDE/Oval2LongRun.jmd, StiffSDE/Oval2LongTimes.jmd, StiffSDE/Oval2Timings.jmd, StiffSDE/QuadraticStiffness.jmd, StiffSDE/StochasticHeat.jmd (#123) (@github-actions[bot])
  • Rebuild NonStiffDDE/Mackey_Glass_wpd.jmd, NonStiffDDE/Wheldon_Kirk_Finlay_wpd.jmd (#125) (@github-actions[bot])
  • Rebuild StiffDDE/QuorumSensing.jmd (#127) (@github-actions[bot])
  • Rebuild StiffSDE/StochasticHeat.jmd (#133) (@github-actions[bot])
  • Rebuild Jumps/Mendes_multistate_example.jmd (#134) (@github-actions[bot])
  • Rebuild NonStiffDDE/Mackey_Glass_wpd.jmd (#135) (@github-actions[bot])
  • Avoid module usage (#136) (@SebastianM-C)
  • Add missing package (#139) (@SebastianM-C)
  • CompatHelper: add new compat entry for "StatsPlots" at version "0.14" for package NBodySimulator (#140) (@github-actions[bot])
  • CompatHelper: add new compat entry for "StaticArrays" at version "0.12" for package NBodySimulator (#141) (@github-actions[bot])
  • CompatHelper: add new compat entry for "Plots" at version "1.5" for package NBodySimulator (#142) (@github-actions[bot])
  • CompatHelper: add new compat entry for "OrdinaryDiffEq" at version "5.41" for package NBodySimulator (#143) (@github-actions[bot])
  • CompatHelper: add new compat entry for "ProgressLogging" at version "0.1" for package NBodySimulator (#144) (@github-actions[bot])
  • CompatHelper: add new compat entry for "DataFrames" at version "0.21" for package NBodySimulator (#145) (@github-actions[bot])
  • CompatHelper: add new compat entry for "NBodySimulator" at version "1.3" for package NBodySimulator (#146) (@github-actions[bot])
  • CompatHelper: add new compat entry for "BenchmarkTools" at version "0.5" for package NBodySimulator (#147) (@github-actions[bot])
  • Rebuild NonStiffODE/ThreeBody_wpd.jmd (#149) (@github-actions[bot])
  • Finish renaming DiffEqBenchmarks -> SciMLBenchmarks (#150) (@christopher-dG)
  • Rebuild MOLPDE/ks_spectral_wpd.jmd (#153) (@github-actions[bot])
  • Rebuild MOLPDE/burgers_spectral_wpd.jmd (#154) (@github-actions[bot])
  • Rebuild StiffDDE/QuorumSensing.jmd (#156) (@github-actions[bot])
  • Special case for TaylorIntegration (#157) (@SebastianM-C)
  • Rebuild NonStiffODE/LotkaVolterra_wpd.jmd (#159) (@github-actions[bot])
  • CompatHelper: bump compat for "ReactionNetworkImporters" to "0.2" for package StiffODE (#161) (@github-actions[bot])
  • CompatHelper: bump compat for "ApproxFun" to "0.12" for package MOLPDE (#162) (@github-actions[bot])
  • CompatHelper: bump compat for "Distribution...
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