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Rothamsted

Tools and resources from Rothamsted Research

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  1. knetminer knetminer Public

    KnetMiner - webapp to search and visualize genome-scale knowledge graphs

    JavaScript 25 16

  2. knetmaps.js knetmaps.js Public

    KnetMaps: a BioJS component to visualize biological knowledge networks

    JavaScript 10 6

  3. knetbuilder knetbuilder Public

    KnetBuilder data integration platform for building knowledge graphs. Previously known as ondex.

    Java 12 11

  4. rdf2pg rdf2pg Public

    tools to convert/load RDF into Neo4j

    Java 40 10

  5. genelist-api genelist-api Public

    KnetMiner API query tool for list of genes

    Python 1 2

  6. bioknet-onto bioknet-onto Public

    The Bio Knowledge Network, powering knowledge graphs released by the Knetminer project

    XSLT 4

Repositories

Showing 10 of 41 repositories
  • knetminer-backend Public

    The new Knetminer backend, based on graph databases.

    Java 0 1 0 1 Updated May 2, 2024
  • knetminer Public

    KnetMiner - webapp to search and visualize genome-scale knowledge graphs

    JavaScript 25 MIT 16 54 (1 issue needs help) 4 Updated Apr 29, 2024
  • agri-schemas Public

    Development of schemas and ontologies for the agrifood, inspired to schema.org and bioschemas.

    Python 4 1 0 0 Updated Apr 24, 2024
  • knetminer-common Public

    Parent POM for Knetminer projects, also containing common files.

    Shell 2 0 0 3 Updated Mar 26, 2024
  • rdf2pg Public

    tools to convert/load RDF into Neo4j

    Java 40 LGPL-3.0 10 0 2 Updated Mar 15, 2024
  • knetbuilder Public

    KnetBuilder data integration platform for building knowledge graphs. Previously known as ondex.

    Java 12 MIT 11 6 4 Updated Mar 11, 2024
  • graphdb-benchmarks Public

    Application to benchmark Neo4j+Cypher/Virtuoso+SPARQL/ArcadeDB+Gremlin querying

    Jupyter Notebook 5 4 0 2 Updated Dec 5, 2023
  • neo4j-server-maven-plugin Public

    Start and stop any version of Neo4j community server

    Java 0 Apache-2.0 1 0 1 Updated Dec 5, 2023
  • knetgraphs-gene-traits Public

    Enrichment Analysis Use Cases. Tools to analyse plant biology knowledge graphs and find significant traits and bioprocess from gene expression sets. The project uses data from Knetminer, ENSEMBL, EBI Gene Expression Atlas and others, exported as Knowledge graphs using Agrischemas/Bioschemas annotations.

    Jupyter Notebook 3 AGPL-3.0 0 0 0 Updated Nov 17, 2023
  • knetminer-testing Public

    Material about testing knetminer

    0 0 0 0 Updated Nov 15, 2023
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