Guidelines:
- It is expected that everyone reads the article (at least skim it!) before the Journal Club. We want to focus on the discussion, not a summary of the article.
- Do not worry about creating a slide show. Instead, annotate the PDF directly and present the PDF. Highlight the points for discussion.
- The paper should be of interest to at least one other person besides you. The #rajlab_journalclub channel is a good place to find articles.
- Each article discussion should last about 30 minutes. 10 minutes should be spent on summary, 20 minutes should be spent on discussion.
- When your rotation is coming up, copy the top template line of the table below and update the cells. Dont overwrite the template line!!!!
Rotation (by seniority):
- Justin
- Daren
- Ben
- Farras
- Robin
- Ashish
| Date (MM-DD-YYYY) | Article | Author | Presenter | Article Link |
|---|---|---|---|---|
| Date | ArticleTitle | 1stAuthor | Presenter | Link |
| 06-04-2024 | ArticleTitle | 1stAuthor | Presenter | Link |
| 05-28-2024 | ArticleTitle | 1stAuthor | Ashish | Link |
| 05-21-2024 | ArticleTitle | 1stAuthor | Robin | Link |
| 05-14-2024 | ArticleTitle | 1stAuthor | Farras | Link |
| 05-07-2024 | ArticleTitle | 1stAuthor | Daren | Link |
| 04-30-2024 | Whole-cortex in situ sequencing reveals input-dependent area identity | Chen | Justin | Link |
| 04-23-2024 | Layer and rhythm specificity for predictive routing | Bastos | Ben | Link |
| 04-16-2024 | Dynamical Bias in the Coin Toss | Diaconis | Ben | Link |
| 04-09-2024 | Four distinct trajectories of tau deposition identified in Alzheimer’s disease | Vogel | Robin | Link |
| 04-09-2024 | Two recent papers on AI in AD | 1stAuthor | Ashish | Link Link |
| 04-02-2024 | The Low Rank Hypothesis of Complex Systems | Thibeault | Ben | Link |
| 03-26-2024 | Graph learning from EEG data improves brain fingerprinting compared to correlation-based connectomes, Uncovering the heterogeneity and temporal complexity of neurodegenerative diseases with Subtype and Stage Inference | Miri, Young | Farras, Robin | Link, Link |
| 03-19-2024 | Neural signal propagation atlas of Caenorhabditis elegans | Randi | Ben | Link |
| 03-12-2024 | scGPT: toward building a foundation model for single-cell multi-omics using generative AI | Haotian Cui | Daren | Link |
| 02-27-2024 | Early Alzheimer’s disease pathology in human cortex involves transient cell states | Gazestani V | Justin | Paper |
| 04-12-2022 | Surface-Based Connectivity Integration: An atlas-free approach to jointly study functional and structural connectivity | Cole and Murray et al. | Ben Sipes | Paper |
| 04-05-2022 | Review of multiple microstate papers | Various authors | Ben Sipes | Slides |
| 22-02-2022 | Ten simple rules for structuring papers | Brett Mensh and Konrad Kording | Parul Verma | Slides |
| 09-14-2021 | Perturbations in dynamical models of whole-brain activity dissociate between the level and stability of consciousness | Sanz Perl et al | Parul Verma | Paper |
| 08-24-2021 | Training deep neural density estimators to identify mechanistic models of neural dynamics | Gonçalves et al | Parul Verma | Paper |
| 07-20-2021 | Is the brain macroscopically linear? A system identification of resting state dynamics | Nozari et al | Xihe Xie and Parul Verma | Slides |
| 06-22-2021 | A biophysical model of dynamic balancing of excitation and inhibition in fast oscillatory large-scale networks | Abesuriya et al | Parul Verma | Slides |
| 05-18-2021 | Comparing spatial null models for brain maps | Markello & Misic | Xi He | Slides |
| 05-04-2021 | Single or multiple frequency generators in on-going brain activity: A mechanistic whole-brain model of empirical MEG data | Deco et al | Parul Verma | Slides |
| 01-12-2021 | Attenuated CSF-1R signalling drives cerebrovascular pathology | Delaney et al | Chaitali Anand | Paper |
| 12-22-2020 | Parameterizing neural power spectra into periodic and aperiodic components | Donoghue et al | Hunter Dlugas | Paper |
| 12-15-2020 | Dynamic Causal Modeling for fMRI with Wilson-Cowan-Based Neuronal Equations | Sadeghi et al | Hunter Dlugas | Paper |
| 11-10-2020 | Brain States and Transitions: Insights from Computational Neuroscience | Kringelbach and Deco | Parul Verma | Paper |
| 09-15-2020 | Modeling regional changes in dynamic stability during sleep and wakefulness | Ipina et al | Parul Verma | Paper |
| 09-15-2020 | Neuroscience Needs Behavior: Correcting a Reductionist Bias | Krakauer et al | Xi He | Slides, ResearchHub |
| 07-27-2020 | Intrinsic network architecture predicts the effects elicited by intracranial electrical stimulation of the human brain | Kieran C. R. Fox et al | Xi He | Slides |
| 07-07-2020 | *OHBM Stuff | OHBM | Xi He | Slides |
| 07-07-2020 | OHBM 2020 Meeting Summary | OHBM | Parul Verma | Slides |
| 06-30-2020 | OHBM 2020 Meeting Summary | OHBM | Parul Verma | Slides |
| 06-22-2020 | OHBM 2020 BrainHack Summary | OHBM | Parul Verma | Slides |
| 06-08-2020 | Brain Initiative Investigators Meeting summary | Multiple presenters | Parul Verma | Slides |
| 05-11-2020 | Associative white matter connecting the dorsal and ventral posterior human cortex | Bullock et al | Xi He | Google Slides |
| 05-04-2020 | Systematic Integration of Structural and Functional Data into Multi-scale Models of Mouse Primary Visual Cortex | Billeh et al | Pedro | |
| 04-27-2020 | An electroencephalographic signature predicts antidepressant response in major depression | Wu et al | Xi He | Google Slides |
| 04-13-2020 | Spectral mapping of brain functional connectivity from diffusion imaging revisited | Becker et al | Jenn | |
| 04-06-2020 | Spectral mapping of brain functional connectivity from diffusion imaging | Becker et al | Jenn | Google Slides |
| 04-06-2020 | Enhancing face validity of mouse models of Alzheimer’s disease with natural genetic variation | Onos et al | Justin | Google Slides |
| 03-30-2020 | Disease-Associated Microglia: A Universal Immune Sensor of Neurodegeneration | Deczkowska et al | Chris | Google Slides |
| 03-30-2020 | Evidence that alpha blocking is due to increases in system-level oscillatory damping not neuronal population desynchronisation | Liley & Muthukumaraswamy | Xi He | Google Slides |
| 03-16-2020 | Transdiagnostic Brain Mapping in Developmental Disorder | Roma Siugzdaite et al. | Ashish | |
| 03-09-2020 | Diagnostic value of plasma phosphorylated tau181 in Alzheimer’s | Elisabeth H. Thijssen et al. | Justin | PowerPoint |
| 03-03-2020 | Optimising network modeling methods for fMRI | Usama Pervaiz et al. | Xi He | Google Slides |
| 03-02-2020 | Direct Fit to Nature: An Evolutionary Perspective on Biological and Artificial Neural Networks | Uri Hasson et al. | Xi He | Google Slides |
| 03-02-2020 | Meta-modal Information Flow: A Method for Capturing Multimodal Modular Disconnectivity in Schizophrenia | Falakshahi H et al. | Jenn | Google Slides |
When you are the presenter, do the following:
- Update your local repository so it's up to date with the latest remote version:
git pull origin master - Update the tabulated section of this file
- Update remote:
- stage all your updates:
git add -A - create a commit for your updates:
git commit -m'Updated by SOMEONE for WEEK #?' - push changes:
git push origin master
- stage all your updates:
Please use new link posted in rajlab-general slack channel or use personal meeting IDs posted on the day of journal club meeting.