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#2268

#2268 #899

Workflow file for this run

name: "Test Build"
on:
workflow_dispatch:
push:
branches: [ master, production, itrb-test, dev ]
paths:
- 'code/**'
- 'DockerBuild/**'
- 'requirements.txt'
- '.github/workflows/pytest.yml'
pull_request:
branches: [ master, production, itrb-test, dev ]
paths:
- 'code/**'
- 'DockerBuild/**'
- 'requirements.txt'
- '.github/workflows/pytest.yml'
jobs:
analyze:
name: Analyze
runs-on: [self-hosted, ARAX, docker]
permissions:
actions: read
contents: read
security-events: read
strategy:
fail-fast: false
matrix:
language: [ 'python' ]
steps:
- name: Checkout repository
uses: actions/checkout@v2
- name: Set up config files
run: |
scp araxconfig@araxconfig.rtx.ai:config_secrets.json /mnt/config/config_secrets.json
echo "http://localhost:5008/api/rtxkg2/v1.4" > /mnt/config/kg2_url_override.txt
# - name: Append code dir to GITHUB_PATH # Causing RTXConfiguration import error
# run: echo $GITHUB_PATH
# - name: Download databases as needed
# run: python3 $HOME/RTX/code/ARAX/ARAXQuery/ARAX_database_manager.py --mnt --skip-if-exists --remove_unused
- name: Stop any running containers
continue-on-error: true
run: sudo docker stop $(sudo docker ps -aq)
- name: Clean up any left over containers
continue-on-error: true
run: sudo docker rm $(sudo docker ps -aq)
- name: Clean up any left over images
continue-on-error: true
run: sudo docker rmi $(sudo docker images -q)
- name: Build docker image
run: sudo docker build --no-cache=true --rm -t rtx:test DockerBuild/ -f DockerBuild/Merged-Dockerfile
- name: Run docker container
run: sudo docker run -d -it --name rtx_test -v /mnt/data/orangeboard/databases:/mnt/data/orangeboard/databases -v /mnt/config/kg2_url_override.txt:/mnt/data/orangeboard/production/RTX/code/kg2_url_override.txt -v /mnt/config/config_secrets.json:/mnt/data/orangeboard/production/RTX/code/config_secrets.json -v /mnt/config/config_secrets.json:/mnt/data/orangeboard/kg2/RTX/code/config_secrets.json rtx:test
# - name: Add config.domain
# run: |
# sudo docker exec rtx_test bash -c "sudo -u rt bash -c 'cd /mnt/data/orangeboard/production/RTX/code && echo \'RTXTeam/RTX Github actions test suite\' > config.domain'"
# sudo docker exec rtx_test bash -c "sudo -u rt bash -c 'cd /mnt/data/orangeboard/kg2/RTX/code && echo \'RTXTeam/RTX Github actions test suite\' > config.domain'"
- name: Create symlinks
run: |
sudo docker exec rtx_test bash -c "sudo -u rt bash -c 'cd /mnt/data/orangeboard/production/RTX && python3 code/ARAX/ARAXQuery/ARAX_database_manager.py'"
sudo docker exec rtx_test bash -c "sudo -u rt bash -c 'cd /mnt/data/orangeboard/kg2/RTX && python3 code/ARAX/ARAXQuery/ARAX_database_manager.py'"
- name: Build KP info cache
run: sudo docker exec rtx_test bash -c "cd /mnt/data/orangeboard/production/RTX/code/ARAX/ARAXQuery/Expand && python3 kp_info_cacher.py"
- name: Start services
run: |
sudo docker exec rtx_test service apache2 start
sudo docker exec rtx_test service RTX_OpenAPI_kg2 start
sudo docker exec rtx_test service RTX_OpenAPI_production start
sudo docker exec rtx_test service RTX_Complete start
- name: Run tests with pytest
run: sudo docker exec rtx_test bash -c "cd /mnt/data/orangeboard/production/RTX/code/ARAX/test && pytest -v --disable-pytest-warnings"
- name: Remove and delete all docker containers & images
continue-on-error: true
run: |
sudo docker stop $(sudo docker ps -aq)
sudo docker rm $(sudo docker ps -aq)
sudo docker rmi $(sudo docker images -q)