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45 Open 39 Closed
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Issues list

Check status of pybedtools in pip
#174 opened Apr 24, 2023 by afg1
@afg1
Import rediportal data
#173 opened Mar 22, 2023 by blakesweeney
@afg1
Produce species level fasta files
#172 opened Mar 22, 2023 by blakesweeney
@blakesweeney
Validate expression atlas mappings
#171 opened Mar 22, 2023 by blakesweeney
@afg1
Import REDIportal data
#169 opened Feb 9, 2023 by blakesweeney
1 of 4 tasks
@afg1
Ensure precompute uses all expected xrefs
#165 opened Dec 7, 2022 by blakesweeney
@afg1
Migrate to using rnc_taxonomy instead of rnc_accession columns
#161 opened Oct 28, 2022 by blakesweeney
6 of 11 tasks
@blakesweeney @afg1
3
Decide what to do about circRNA and sgRNA new-feature
#157 opened Oct 28, 2022 by afg1
@afg1
Import sequences from IntAct
#154 opened Oct 27, 2022 by blakesweeney
@afg1
Validate changes to 2D diagrams
#150 opened Oct 24, 2022 by blakesweeney
3 tasks
@blakesweeney @afg1
Rescan all sequences
#149 opened Oct 24, 2022 by blakesweeney
@blakesweeney @afg1
Delete all entries in rnc_secondary_structure
#148 opened Oct 24, 2022 by blakesweeney
@blakesweeney @afg1
3
Run the weekly update database import with tower
#144 opened Oct 21, 2022 by blakesweeney
@afg1
Configure a medium sized analysis run
#143 opened Oct 21, 2022 by blakesweeney
@blakesweeney
Configure nextflow/patch pipeline to only run 1000 sequences against r2dt
#142 opened Oct 21, 2022 by blakesweeney
@blakesweeney
Run limited r2dt analysis pipeline using nextflow tower
#141 opened Oct 21, 2022 by blakesweeney
@blakesweeney
Check if reporting is useful
#140 opened Oct 21, 2022 by blakesweeney
6 tasks
@blakesweeney
Auto remove obsoleted GO terms
#138 opened Oct 19, 2022 by afg1
Track database update schedule in rnc_database enhancement
#135 opened Oct 10, 2022 by blakesweeney
@blakesweeney @afg1
Improve batch lookup of GO terms
#133 opened Sep 16, 2022 by blakesweeney
@afg1
Fix duplicated links for some databases
#131 opened Aug 16, 2022 by blakesweeney
@afg1
Import GTEx data
#129 opened Aug 1, 2022 by blakesweeney
@blakesweeney @afg1
Fetch mouse phenotype data
#128 opened Aug 1, 2022 by blakesweeney
@afg1
Import NPInter data
#127 opened Jun 22, 2022 by blakesweeney
@afg1
Consider importing CLC2 lncRNA data
#122 opened Jun 13, 2022 by blakesweeney
@blakesweeney @afg1
2
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