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CI on ARM Mac #269

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Krastanov
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Some of our Python optional extensions (the ldpc python package) seem to fail to install on some mac systems. Adding CI for mac on x64 and arm.

@amicciche

@Krastanov Krastanov added the Skip-Changelog label for control of CI: skips the changelog check label Apr 29, 2024
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@amicciche , could you copy paste in a code block the entire stack trace for the installation failure you get on an ARM mac?

E.g. the result of

julia +1.10 --project=some_new_folder -tauto
] add QuantumClifford PyQDecoders
using QuantumClifford, PyQDecoders
versioninfo(verbose=true)

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github-actions bot commented Apr 29, 2024 •
edited

Benchmark Result

Judge result

Benchmark Report for /home/runner/work/QuantumClifford.jl/QuantumClifford.jl

Job Properties

  • Time of benchmarks:
  • Target: 29 Apr 2024 - 13:28
  • Baseline: 29 Apr 2024 - 13:35
  • Package commits:
  • Target: c96196
  • Baseline: d6018f
  • Julia commits:
  • Target: 6023ad
  • Baseline: 6023ad
  • Julia command flags:
  • Target: None
  • Baseline: None
  • Environment variables:
  • Target: None
  • Baseline: None

Results

A ratio greater than 1.0 denotes a possible regression (marked with ❌), while a ratio less
than 1.0 denotes a possible improvement (marked with ✅). Only significant results - results
that indicate possible regressions or improvements - are shown below (thus, an empty table means that all
benchmark results remained invariant between builds).

ID time ratio memory ratio
["clifford", "dense", "dense500_on_diag500_destab"] 0.87 (5%) ✅ 1.00 (1%)
["ecc", "evaluate_decoder", "shor_bp_shorsyn"] 0.94 (5%) ✅ 0.99 (1%) ✅
["ecc", "evaluate_decoder", "toric8_bp_comm"] 0.97 (5%) 0.98 (1%) ✅
["ecc", "evaluate_decoder", "toric8_bp_naivesyn"] 1.04 (5%) 0.99 (1%) ✅
["pauli", "mul", "100"] 0.74 (5%) ✅ 1.00 (1%)
["pauli", "mul", "1000"] 0.78 (5%) ✅ 1.00 (1%)
["pauli", "mul", "20000000"] 1.05 (5%) ❌ 1.00 (1%)

Benchmark Group List

Here's a list of all the benchmark groups executed by this job:

  • ["circuitsim", "compactification"]
  • ["circuitsim", "mctrajectories"]
  • ["circuitsim", "mctrajectories_sumtype"]
  • ["circuitsim", "mctrajectories_union"]
  • ["circuitsim", "pftrajectories"]
  • ["circuitsim", "pftrajectories_sumtype"]
  • ["circuitsim", "pftrajectories_union"]
  • ["clifford", "dense"]
  • ["clifford", "symbolic"]
  • ["ecc", "evaluate_decoder"]
  • ["pauli", "mul"]
  • ["stabilizer", "canon"]
  • ["stabilizer", "project"]
  • ["stabilizer", "tensor"]
  • ["stabilizer", "trace"]

Julia versioninfo

Target

Julia Version 1.12.0-DEV.427
Commit 6023ad67185 (2024-04-28 07:31 UTC)
Build Info:
 Official https://julialang.org/ release
Platform Info:
 OS: Linux (x86_64-linux-gnu)
 Ubuntu 22.04.4 LTS
 uname: Linux 6.5.0-1018-azure #19~22.04.2-Ubuntu SMP Thu Mar 21 16:45:46 UTC 2024 x86_64 x86_64
 CPU: AMD EPYC 7763 64-Core Processor: 
 speed user nice sys idle irq
 #1 0 MHz 2069 s 0 s 156 s 7350 s 0 s
 #2 0 MHz 1661 s 0 s 161 s 7748 s 0 s
 #3 0 MHz 2619 s 0 s 178 s 6768 s 0 s
 #4 0 MHz 3054 s 0 s 172 s 6348 s 0 s
 Memory: 15.606494903564453 GB (13394.98046875 MB free)
 Uptime: 961.73 sec
 Load Avg: 1.0 1.0 0.71
 WORD_SIZE: 64
 LLVM: libLLVM-16.0.6 (ORCJIT, znver3)
Threads: 1 default, 0 interactive, 1 GC (on 4 virtual cores)

Baseline

Julia Version 1.12.0-DEV.427
Commit 6023ad67185 (2024-04-28 07:31 UTC)
Build Info:
 Official https://julialang.org/ release
Platform Info:
 OS: Linux (x86_64-linux-gnu)
 Ubuntu 22.04.4 LTS
 uname: Linux 6.5.0-1018-azure #19~22.04.2-Ubuntu SMP Thu Mar 21 16:45:46 UTC 2024 x86_64 x86_64
 CPU: AMD EPYC 7763 64-Core Processor: 
 speed user nice sys idle irq
 #1 0 MHz 3782 s 0 s 192 s 9756 s 0 s
 #2 0 MHz 3678 s 0 s 209 s 9838 s 0 s
 #3 0 MHz 2786 s 0 s 219 s 10712 s 0 s
 #4 0 MHz 3265 s 0 s 215 s 10246 s 0 s
 Memory: 15.606494903564453 GB (13296.4140625 MB free)
 Uptime: 1377.73 sec
 Load Avg: 1.01 1.0 0.84
 WORD_SIZE: 64
 LLVM: libLLVM-16.0.6 (ORCJIT, znver3)
Threads: 1 default, 0 interactive, 1 GC (on 4 virtual cores)

Target result

Benchmark Report for /home/runner/work/QuantumClifford.jl/QuantumClifford.jl

Job Properties

  • Time of benchmark: 29 Apr 2024 - 13:28
  • Package commit: c96196
  • Julia commit: 6023ad
  • Julia command flags: None
  • Environment variables: None

Results

Below is a table of this job's results, obtained by running the benchmarks.
The values listed in the ID column have the structure [parent_group, child_group, ..., key], and can be used to
index into the BaseBenchmarks suite to retrieve the corresponding benchmarks.
The percentages accompanying time and memory values in the below table are noise tolerances. The "true"
time/memory value for a given benchmark is expected to fall within this percentage of the reported value.
An empty cell means that the value was zero.

ID time GC time memory allocations
["circuitsim", "compactification", "compact"] 7.063 ms (5%)
["circuitsim", "compactification", "no_compact"] 7.311 ms (5%) 281.25 KiB (1%) 6000
["circuitsim", "mctrajectories", "q1001_r1"] 15.235 ms (5%) 500.77 KiB (1%) 18019
["circuitsim", "mctrajectories", "q101_r1"] 171.579 μs (5%) 50.53 KiB (1%) 1818
["circuitsim", "mctrajectories_sumtype", "q1001_r1"] 13.143 ms (5%) 496 bytes (1%) 9
["circuitsim", "mctrajectories_sumtype", "q101_r1"] 119.151 μs (5%) 256 bytes (1%) 8
["circuitsim", "mctrajectories_union", "q1001_r1"] 13.107 ms (5%) 496 bytes (1%) 9
["circuitsim", "mctrajectories_union", "q101_r1"] 117.929 μs (5%) 256 bytes (1%) 8
["circuitsim", "pftrajectories", "q1001_r1"] 59.651 μs (5%) 93.80 KiB (1%) 2001
["circuitsim", "pftrajectories", "q1001_r100"] 169.765 μs (5%) 93.80 KiB (1%) 2001
["circuitsim", "pftrajectories", "q1001_r10000"] 1.096 ms (5%) 93.80 KiB (1%) 2001
["circuitsim", "pftrajectories", "q101_r1"] 6.001 μs (5%) 9.42 KiB (1%) 201
["circuitsim", "pftrajectories_sumtype", "q1001_r1"] 42.569 μs (5%)
["circuitsim", "pftrajectories_sumtype", "q1001_r100"] 150.480 μs (5%)
["circuitsim", "pftrajectories_sumtype", "q1001_r10000"] 1.079 ms (5%)
["circuitsim", "pftrajectories_sumtype", "q1001_r10000_fastrow"] 5.825 ms (5%)
["circuitsim", "pftrajectories_sumtype", "q101_r1"] 4.227 μs (5%)
["circuitsim", "pftrajectories_union", "q1001_r1"] 22.611 μs (5%) 96 bytes (1%) 2
["circuitsim", "pftrajectories_union", "q1001_r100"] 132.626 μs (5%) 96 bytes (1%) 2
["circuitsim", "pftrajectories_union", "q1001_r10000"] 1.053 ms (5%) 96 bytes (1%) 2
["circuitsim", "pftrajectories_union", "q101_r1"] 2.334 μs (5%) 96 bytes (1%) 2
["clifford", "dense", "cnot250_on_dense500_destab"] 11.619 ms (5%) 512 bytes (1%) 8
["clifford", "dense", "cnot250_on_dense500_stab"] 5.781 ms (5%) 512 bytes (1%) 8
["clifford", "dense", "cnot250_on_diag500_destab"] 1.123 ms (5%) 512 bytes (1%) 8
["clifford", "dense", "cnot250_on_diag500_stab"] 490.470 μs (5%) 512 bytes (1%) 8
["clifford", "dense", "cnot_on_dense500_destab"] 50.955 μs (5%) 368 bytes (1%) 10
["clifford", "dense", "cnot_on_dense500_stab"] 23.373 μs (5%) 368 bytes (1%) 10
["clifford", "dense", "cnot_on_diag500_destab"] 26.469 μs (5%) 368 bytes (1%) 10
["clifford", "dense", "cnot_on_diag500_stab"] 13.375 μs (5%) 368 bytes (1%) 10
["clifford", "dense", "dense500_on_dense500_destab"] 11.616 ms (5%) 512 bytes (1%) 8
["clifford", "dense", "dense500_on_dense500_stab"] 5.785 ms (5%) 512 bytes (1%) 8
["clifford", "dense", "dense500_on_diag500_destab"] 980.138 μs (5%) 512 bytes (1%) 8
["clifford", "dense", "dense500_on_diag500_stab"] 490.450 μs (5%) 512 bytes (1%) 8
["clifford", "symbolic", "cnot250_on_dense500_destab"] 1.434 ms (5%)
["clifford", "symbolic", "cnot250_on_dense500_stab"] 686.604 μs (5%)
["clifford", "symbolic", "cnot250_on_diag500_destab"] 1.161 ms (5%)
["clifford", "symbolic", "cnot250_on_diag500_stab"] 569.026 μs (5%)
["clifford", "symbolic", "cnot_on_dense500_destab"] 4.738 μs (5%)
["clifford", "symbolic", "cnot_on_dense500_stab"] 2.304 μs (5%)
["clifford", "symbolic", "cnot_on_diag500_destab"] 4.658 μs (5%)
["clifford", "symbolic", "cnot_on_diag500_stab"] 2.294 μs (5%)
["ecc", "evaluate_decoder", "shor_bp_comm"] 1.835 ms (5%) 1.77 MiB (1%) 42497
["ecc", "evaluate_decoder", "shor_bp_naivesyn"] 4.314 ms (5%) 3.64 MiB (1%) 82231
["ecc", "evaluate_decoder", "shor_bp_shorsyn"] 4.717 ms (5%) 3.72 MiB (1%) 83103
["ecc", "evaluate_decoder", "shor_pybp_comm"] 24.859 ms (5%) 3.97 MiB (1%) 116082
["ecc", "evaluate_decoder", "shor_pybp_naivesyn"] 50.858 ms (5%) 7.99 MiB (1%) 228127
["ecc", "evaluate_decoder", "shor_pybp_shorsyn"] 50.816 ms (5%) 8.07 MiB (1%) 229125
["ecc", "evaluate_decoder", "shor_table_comm"] 255.750 μs (5%) 241.42 KiB (1%) 4593
["ecc", "evaluate_decoder", "shor_table_naivesyn"] 1.090 ms (5%) 350.69 KiB (1%) 5149
["ecc", "evaluate_decoder", "shor_table_shorsyn"] 1.491 ms (5%) 440.03 KiB (1%) 6147
["ecc", "evaluate_decoder", "toric8_bp_comm"] 679.779 ms (5%) 10.993 ms 171.49 MiB (1%) 1028329
["ecc", "evaluate_decoder", "toric8_bp_naivesyn"] 1.466 s (5%) 25.121 ms 353.46 MiB (1%) 2151382
["ecc", "evaluate_decoder", "toric8_bp_shorsyn"] 1.459 s (5%) 25.415 ms 352.73 MiB (1%) 2166440
["ecc", "evaluate_decoder", "toric8_pybp_comm"] 397.648 ms (5%) 7.31 MiB (1%) 135571
["ecc", "evaluate_decoder", "toric8_pybp_naivesyn"] 815.128 ms (5%) 16.90 MiB (1%) 317594
["ecc", "evaluate_decoder", "toric8_pybp_shorsyn"] 817.240 ms (5%) 19.37 MiB (1%) 351510
["ecc", "evaluate_decoder", "toric8_pymatch_comm"] 4.274 ms (5%) 1.95 MiB (1%) 23176
["ecc", "evaluate_decoder", "toric8_pymatch_naivesyn"] 17.203 ms (5%) 6.03 MiB (1%) 92811
["ecc", "evaluate_decoder", "toric8_pymatch_shorsyn"] 25.756 ms (5%) 8.50 MiB (1%) 126727
["ecc", "evaluate_decoder", "toric8_table_comm"] 2.620 ms (5%) 1.64 MiB (1%) 23082
["ecc", "evaluate_decoder", "toric8_table_naivesyn"] 14.784 ms (5%) 5.38 MiB (1%) 92616
["ecc", "evaluate_decoder", "toric8_table_shorsyn"] 23.352 ms (5%) 7.85 MiB (1%) 126532
["pauli", "mul", "100"] 14.425 ns (5%)
["pauli", "mul", "1000"] 17.829 ns (5%)
["pauli", "mul", "100000"] 719.378 ns (5%)
["pauli", "mul", "20000000"] 208.108 μs (5%)
["stabilizer", "canon", "cano500"] 3.098 ms (5%)
["stabilizer", "canon", "diag_cano500"] 709.183 μs (5%)
["stabilizer", "canon", "diag_gott500"] 4.052 ms (5%) 5.19 MiB (1%) 34521
["stabilizer", "canon", "diag_rref500"] 627.083 μs (5%)
["stabilizer", "canon", "gott500"] 6.426 ms (5%) 5.19 MiB (1%) 34531
["stabilizer", "canon", "md_cano500"] 1.532 ms (5%)
["stabilizer", "canon", "md_rref500"] 1.569 ms (5%)
["stabilizer", "canon", "rref500"] 3.110 ms (5%)
["stabilizer", "project", "destabilizer"] 18.645 μs (5%) 288 bytes (1%) 5
["stabilizer", "project", "stabilizer"] 9.076 μs (5%) 80 bytes (1%) 2
["stabilizer", "tensor", "diag_pow5_20"] 1.294 ms (5%) 23.97 MiB (1%) 34
["stabilizer", "tensor", "pow5_20"] 2.829 μs (5%) 6.44 KiB (1%) 31
["stabilizer", "trace", "destabilizer"] 31.048 μs (5%) 80 bytes (1%) 2
["stabilizer", "trace", "stabilizer"] 24.235 μs (5%) 112 bytes (1%) 3

Benchmark Group List

Here's a list of all the benchmark groups executed by this job:

  • ["circuitsim", "compactification"]
  • ["circuitsim", "mctrajectories"]
  • ["circuitsim", "mctrajectories_sumtype"]
  • ["circuitsim", "mctrajectories_union"]
  • ["circuitsim", "pftrajectories"]
  • ["circuitsim", "pftrajectories_sumtype"]
  • ["circuitsim", "pftrajectories_union"]
  • ["clifford", "dense"]
  • ["clifford", "symbolic"]
  • ["ecc", "evaluate_decoder"]
  • ["pauli", "mul"]
  • ["stabilizer", "canon"]
  • ["stabilizer", "project"]
  • ["stabilizer", "tensor"]
  • ["stabilizer", "trace"]

Julia versioninfo

Julia Version 1.12.0-DEV.427
Commit 6023ad67185 (2024-04-28 07:31 UTC)
Build Info:
 Official https://julialang.org/ release
Platform Info:
 OS: Linux (x86_64-linux-gnu)
 Ubuntu 22.04.4 LTS
 uname: Linux 6.5.0-1018-azure #19~22.04.2-Ubuntu SMP Thu Mar 21 16:45:46 UTC 2024 x86_64 x86_64
 CPU: AMD EPYC 7763 64-Core Processor: 
 speed user nice sys idle irq
 #1 0 MHz 2069 s 0 s 156 s 7350 s 0 s
 #2 0 MHz 1661 s 0 s 161 s 7748 s 0 s
 #3 0 MHz 2619 s 0 s 178 s 6768 s 0 s
 #4 0 MHz 3054 s 0 s 172 s 6348 s 0 s
 Memory: 15.606494903564453 GB (13394.98046875 MB free)
 Uptime: 961.73 sec
 Load Avg: 1.0 1.0 0.71
 WORD_SIZE: 64
 LLVM: libLLVM-16.0.6 (ORCJIT, znver3)
Threads: 1 default, 0 interactive, 1 GC (on 4 virtual cores)

Baseline result

Benchmark Report for /home/runner/work/QuantumClifford.jl/QuantumClifford.jl

Job Properties

  • Time of benchmark: 29 Apr 2024 - 13:35
  • Package commit: d6018f
  • Julia commit: 6023ad
  • Julia command flags: None
  • Environment variables: None

Results

Below is a table of this job's results, obtained by running the benchmarks.
The values listed in the ID column have the structure [parent_group, child_group, ..., key], and can be used to
index into the BaseBenchmarks suite to retrieve the corresponding benchmarks.
The percentages accompanying time and memory values in the below table are noise tolerances. The "true"
time/memory value for a given benchmark is expected to fall within this percentage of the reported value.
An empty cell means that the value was zero.

ID time GC time memory allocations
["circuitsim", "compactification", "compact"] 7.001 ms (5%)
["circuitsim", "compactification", "no_compact"] 7.160 ms (5%) 281.25 KiB (1%) 6000
["circuitsim", "mctrajectories", "q1001_r1"] 15.168 ms (5%) 500.77 KiB (1%) 18019
["circuitsim", "mctrajectories", "q101_r1"] 169.325 μs (5%) 50.53 KiB (1%) 1818
["circuitsim", "mctrajectories_sumtype", "q1001_r1"] 13.166 ms (5%) 496 bytes (1%) 9
["circuitsim", "mctrajectories_sumtype", "q101_r1"] 118.701 μs (5%) 256 bytes (1%) 8
["circuitsim", "mctrajectories_union", "q1001_r1"] 13.150 ms (5%) 496 bytes (1%) 9
["circuitsim", "mctrajectories_union", "q101_r1"] 117.027 μs (5%) 256 bytes (1%) 8
["circuitsim", "pftrajectories", "q1001_r1"] 62.106 μs (5%) 93.80 KiB (1%) 2001
["circuitsim", "pftrajectories", "q1001_r100"] 175.417 μs (5%) 93.80 KiB (1%) 2001
["circuitsim", "pftrajectories", "q1001_r10000"] 1.102 ms (5%) 93.80 KiB (1%) 2001
["circuitsim", "pftrajectories", "q101_r1"] 6.202 μs (5%) 9.42 KiB (1%) 201
["circuitsim", "pftrajectories_sumtype", "q1001_r1"] 43.321 μs (5%)
["circuitsim", "pftrajectories_sumtype", "q1001_r100"] 151.802 μs (5%)
["circuitsim", "pftrajectories_sumtype", "q1001_r10000"] 1.084 ms (5%)
["circuitsim", "pftrajectories_sumtype", "q1001_r10000_fastrow"] 5.823 ms (5%)
["circuitsim", "pftrajectories_sumtype", "q101_r1"] 4.398 μs (5%)
["circuitsim", "pftrajectories_union", "q1001_r1"] 22.602 μs (5%) 96 bytes (1%) 2
["circuitsim", "pftrajectories_union", "q1001_r100"] 134.771 μs (5%) 96 bytes (1%) 2
["circuitsim", "pftrajectories_union", "q1001_r10000"] 1.058 ms (5%) 96 bytes (1%) 2
["circuitsim", "pftrajectories_union", "q101_r1"] 2.334 μs (5%) 96 bytes (1%) 2
["clifford", "dense", "cnot250_on_dense500_destab"] 11.574 ms (5%) 512 bytes (1%) 8
["clifford", "dense", "cnot250_on_dense500_stab"] 5.785 ms (5%) 512 bytes (1%) 8
["clifford", "dense", "cnot250_on_diag500_destab"] 1.123 ms (5%) 512 bytes (1%) 8
["clifford", "dense", "cnot250_on_diag500_stab"] 490.643 μs (5%) 512 bytes (1%) 8
["clifford", "dense", "cnot_on_dense500_destab"] 49.612 μs (5%) 368 bytes (1%) 10
["clifford", "dense", "cnot_on_dense500_stab"] 23.183 μs (5%) 368 bytes (1%) 10
["clifford", "dense", "cnot_on_diag500_destab"] 26.179 μs (5%) 368 bytes (1%) 10
["clifford", "dense", "cnot_on_diag500_stab"] 13.355 μs (5%) 368 bytes (1%) 10
["clifford", "dense", "dense500_on_dense500_destab"] 11.586 ms (5%) 512 bytes (1%) 8
["clifford", "dense", "dense500_on_dense500_stab"] 5.787 ms (5%) 512 bytes (1%) 8
["clifford", "dense", "dense500_on_diag500_destab"] 1.123 ms (5%) 512 bytes (1%) 8
["clifford", "dense", "dense500_on_diag500_stab"] 490.593 μs (5%) 512 bytes (1%) 8
["clifford", "symbolic", "cnot250_on_dense500_destab"] 1.432 ms (5%)
["clifford", "symbolic", "cnot250_on_dense500_stab"] 686.368 μs (5%)
["clifford", "symbolic", "cnot250_on_diag500_destab"] 1.162 ms (5%)
["clifford", "symbolic", "cnot250_on_diag500_stab"] 569.009 μs (5%)
["clifford", "symbolic", "cnot_on_dense500_destab"] 4.769 μs (5%)
["clifford", "symbolic", "cnot_on_dense500_stab"] 2.294 μs (5%)
["clifford", "symbolic", "cnot_on_diag500_destab"] 4.679 μs (5%)
["clifford", "symbolic", "cnot_on_diag500_stab"] 2.294 μs (5%)
["ecc", "evaluate_decoder", "shor_bp_comm"] 1.809 ms (5%) 1.77 MiB (1%) 42581
["ecc", "evaluate_decoder", "shor_bp_naivesyn"] 4.345 ms (5%) 3.64 MiB (1%) 82329
["ecc", "evaluate_decoder", "shor_bp_shorsyn"] 5.003 ms (5%) 3.78 MiB (1%) 84461
["ecc", "evaluate_decoder", "shor_pybp_comm"] 24.791 ms (5%) 3.97 MiB (1%) 116082
["ecc", "evaluate_decoder", "shor_pybp_naivesyn"] 49.852 ms (5%) 7.99 MiB (1%) 228127
["ecc", "evaluate_decoder", "shor_pybp_shorsyn"] 50.080 ms (5%) 8.07 MiB (1%) 229125
["ecc", "evaluate_decoder", "shor_table_comm"] 255.015 μs (5%) 241.42 KiB (1%) 4593
["ecc", "evaluate_decoder", "shor_table_naivesyn"] 1.092 ms (5%) 350.69 KiB (1%) 5149
["ecc", "evaluate_decoder", "shor_table_shorsyn"] 1.494 ms (5%) 440.03 KiB (1%) 6147
["ecc", "evaluate_decoder", "toric8_bp_comm"] 701.547 ms (5%) 14.432 ms 174.23 MiB (1%) 1044457
["ecc", "evaluate_decoder", "toric8_bp_naivesyn"] 1.407 s (5%) 28.839 ms 358.30 MiB (1%) 2179823
["ecc", "evaluate_decoder", "toric8_bp_shorsyn"] 1.416 s (5%) 36.643 ms 353.05 MiB (1%) 2168323
["ecc", "evaluate_decoder", "toric8_pybp_comm"] 401.585 ms (5%) 7.31 MiB (1%) 135571
["ecc", "evaluate_decoder", "toric8_pybp_naivesyn"] 821.541 ms (5%) 16.90 MiB (1%) 317594
["ecc", "evaluate_decoder", "toric8_pybp_shorsyn"] 842.087 ms (5%) 19.37 MiB (1%) 351510
["ecc", "evaluate_decoder", "toric8_pymatch_comm"] 4.219 ms (5%) 1.95 MiB (1%) 23176
["ecc", "evaluate_decoder", "toric8_pymatch_naivesyn"] 17.115 ms (5%) 6.03 MiB (1%) 92811
["ecc", "evaluate_decoder", "toric8_pymatch_shorsyn"] 25.712 ms (5%) 8.50 MiB (1%) 126727
["ecc", "evaluate_decoder", "toric8_table_comm"] 2.606 ms (5%) 1.64 MiB (1%) 23082
["ecc", "evaluate_decoder", "toric8_table_naivesyn"] 14.770 ms (5%) 5.38 MiB (1%) 92616
["ecc", "evaluate_decoder", "toric8_table_shorsyn"] 23.418 ms (5%) 7.85 MiB (1%) 126532
["pauli", "mul", "100"] 19.435 ns (5%)
["pauli", "mul", "1000"] 22.859 ns (5%)
["pauli", "mul", "100000"] 741.142 ns (5%)
["pauli", "mul", "20000000"] 197.488 μs (5%)
["stabilizer", "canon", "cano500"] 3.073 ms (5%)
["stabilizer", "canon", "diag_cano500"] 709.190 μs (5%)
["stabilizer", "canon", "diag_gott500"] 4.052 ms (5%) 5.19 MiB (1%) 34521
["stabilizer", "canon", "diag_rref500"] 627.077 μs (5%)
["stabilizer", "canon", "gott500"] 6.437 ms (5%) 5.19 MiB (1%) 34531
["stabilizer", "canon", "md_cano500"] 1.543 ms (5%)
["stabilizer", "canon", "md_rref500"] 1.556 ms (5%)
["stabilizer", "canon", "rref500"] 3.110 ms (5%)
["stabilizer", "project", "destabilizer"] 18.424 μs (5%) 288 bytes (1%) 5
["stabilizer", "project", "stabilizer"] 8.827 μs (5%) 80 bytes (1%) 2
["stabilizer", "tensor", "diag_pow5_20"] 1.350 ms (5%) 23.97 MiB (1%) 34
["stabilizer", "tensor", "pow5_20"] 2.790 μs (5%) 6.44 KiB (1%) 31
["stabilizer", "trace", "destabilizer"] 31.038 μs (5%) 80 bytes (1%) 2
["stabilizer", "trace", "stabilizer"] 24.165 μs (5%) 112 bytes (1%) 3

Benchmark Group List

Here's a list of all the benchmark groups executed by this job:

  • ["circuitsim", "compactification"]
  • ["circuitsim", "mctrajectories"]
  • ["circuitsim", "mctrajectories_sumtype"]
  • ["circuitsim", "mctrajectories_union"]
  • ["circuitsim", "pftrajectories"]
  • ["circuitsim", "pftrajectories_sumtype"]
  • ["circuitsim", "pftrajectories_union"]
  • ["clifford", "dense"]
  • ["clifford", "symbolic"]
  • ["ecc", "evaluate_decoder"]
  • ["pauli", "mul"]
  • ["stabilizer", "canon"]
  • ["stabilizer", "project"]
  • ["stabilizer", "tensor"]
  • ["stabilizer", "trace"]

Julia versioninfo

Julia Version 1.12.0-DEV.427
Commit 6023ad67185 (2024-04-28 07:31 UTC)
Build Info:
 Official https://julialang.org/ release
Platform Info:
 OS: Linux (x86_64-linux-gnu)
 Ubuntu 22.04.4 LTS
 uname: Linux 6.5.0-1018-azure #19~22.04.2-Ubuntu SMP Thu Mar 21 16:45:46 UTC 2024 x86_64 x86_64
 CPU: AMD EPYC 7763 64-Core Processor: 
 speed user nice sys idle irq
 #1 0 MHz 3782 s 0 s 192 s 9756 s 0 s
 #2 0 MHz 3678 s 0 s 209 s 9838 s 0 s
 #3 0 MHz 2786 s 0 s 219 s 10712 s 0 s
 #4 0 MHz 3265 s 0 s 215 s 10246 s 0 s
 Memory: 15.606494903564453 GB (13296.4140625 MB free)
 Uptime: 1377.73 sec
 Load Avg: 1.01 1.0 0.84
 WORD_SIZE: 64
 LLVM: libLLVM-16.0.6 (ORCJIT, znver3)
Threads: 1 default, 0 interactive, 1 GC (on 4 virtual cores)

Runtime information

Runtime Info
BLAS #threads 2
BLAS.vendor() lbt
Sys.CPU_THREADS 4

lscpu output:

Architecture: x86_64
CPU op-mode(s): 32-bit, 64-bit
Address sizes: 48 bits physical, 48 bits virtual
Byte Order: Little Endian
CPU(s): 4
On-line CPU(s) list: 0-3
Vendor ID: AuthenticAMD
Model name: AMD EPYC 7763 64-Core Processor
CPU family: 25
Model: 1
Thread(s) per core: 2
Core(s) per socket: 2
Socket(s): 1
Stepping: 1
BogoMIPS: 4890.86
Flags: fpu vme de pse tsc msr pae mce cx8 apic sep mtrr pge mca cmov pat pse36 clflush mmx fxsr sse sse2 ht syscall nx mmxext fxsr_opt pdpe1gb rdtscp lm constant_tsc rep_good nopl tsc_reliable nonstop_tsc cpuid extd_apicid aperfmperf pni pclmulqdq ssse3 fma cx16 pcid sse4_1 sse4_2 movbe popcnt aes xsave avx f16c rdrand hypervisor lahf_lm cmp_legacy svm cr8_legacy abm sse4a misalignsse 3dnowprefetch osvw topoext invpcid_single vmmcall fsgsbase bmi1 avx2 smep bmi2 erms invpcid rdseed adx smap clflushopt clwb sha_ni xsaveopt xsavec xgetbv1 xsaves clzero xsaveerptr rdpru arat npt nrip_save tsc_scale vmcb_clean flushbyasid decodeassists pausefilter pfthreshold v_vmsave_vmload umip vaes vpclmulqdq rdpid fsrm
Virtualization: AMD-V
Hypervisor vendor: Microsoft
Virtualization type: full
L1d cache: 64 KiB (2 instances)
L1i cache: 64 KiB (2 instances)
L2 cache: 1 MiB (2 instances)
L3 cache: 32 MiB (1 instance)
NUMA node(s): 1
NUMA node0 CPU(s): 0-3
Vulnerability Gather data sampling: Not affected
Vulnerability Itlb multihit: Not affected
Vulnerability L1tf: Not affected
Vulnerability Mds: Not affected
Vulnerability Meltdown: Not affected
Vulnerability Mmio stale data: Not affected
Vulnerability Retbleed: Not affected
Vulnerability Spec rstack overflow: Vulnerable: Safe RET, no microcode
Vulnerability Spec store bypass: Vulnerable
Vulnerability Spectre v1: Mitigation; usercopy/swapgs barriers and __user pointer sanitization
Vulnerability Spectre v2: Mitigation; Retpolines, STIBP disabled, RSB filling, PBRSB-eIBRS Not affected
Vulnerability Srbds: Not affected
Vulnerability Tsx async abort: Not affected

Cpu Property Value
Brand AMD EPYC 7763 64-Core Processor
Vendor :AMD
Architecture :Unknown
Model Family: 0xaf, Model: 0x01, Stepping: 0x01, Type: 0x00
Cores 16 physical cores, 16 logical cores (on executing CPU)
No Hyperthreading hardware capability detected
Clock Frequencies Not supported by CPU
Data Cache Level 1:3 : (32, 512, 32768) kbytes
64 byte cache line size
Address Size 48 bits virtual, 48 bits physical
SIMD 256 bit = 32 byte max. SIMD vector size
Time Stamp Counter TSC is accessible via rdtsc
TSC runs at constant rate (invariant from clock frequency)
Perf. Monitoring Performance Monitoring Counters (PMC) are not supported
Hypervisor Yes, Microsoft
Benchmark Result

Judge result

Benchmark Report for /home/runner/work/QuantumClifford.jl/QuantumClifford.jl

Job Properties

  • Time of benchmarks:
  • Target: 29 Apr 2024 - 13:39
  • Baseline: 29 Apr 2024 - 13:47
  • Package commits:
  • Target: dfc7a4
  • Baseline: d6018f
  • Julia commits:
  • Target: 6023ad
  • Baseline: 6023ad
  • Julia command flags:
  • Target: None
  • Baseline: None
  • Environment variables:
  • Target: None
  • Baseline: None

Results

A ratio greater than 1.0 denotes a possible regression (marked with ❌), while a ratio less
than 1.0 denotes a possible improvement (marked with ✅). Only significant results - results
that indicate possible regressions or improvements - are shown below (thus, an empty table means that all
benchmark results remained invariant between builds).

ID time ratio memory ratio
["circuitsim", "compactification", "compact"] 1.09 (5%) ❌ 1.00 (1%)
["circuitsim", "compactification", "no_compact"] 1.06 (5%) ❌ 1.00 (1%)
["circuitsim", "pftrajectories", "q1001_r1"] 1.07 (5%) ❌ 1.00 (1%)
["circuitsim", "pftrajectories_union", "q1001_r10000"] 0.95 (5%) ✅ 1.00 (1%)
["clifford", "symbolic", "cnot_on_dense500_stab"] 1.05 (5%) ❌ 1.00 (1%)
["ecc", "evaluate_decoder", "shor_bp_naivesyn"] 1.15 (5%) ❌ 1.00 (1%)
["ecc", "evaluate_decoder", "shor_bp_shorsyn"] 0.73 (5%) ✅ 0.98 (1%) ✅
["ecc", "evaluate_decoder", "shor_pybp_naivesyn"] 1.08 (5%) ❌ 1.00 (1%)
["ecc", "evaluate_decoder", "toric8_bp_comm"] 1.08 (5%) ❌ 1.06 (1%) ❌
["ecc", "evaluate_decoder", "toric8_bp_naivesyn"] 1.01 (5%) 0.97 (1%) ✅
["ecc", "evaluate_decoder", "toric8_table_comm"] 1.06 (5%) ❌ 1.00 (1%)
["ecc", "evaluate_decoder", "toric8_table_naivesyn"] 1.06 (5%) ❌ 1.00 (1%)
["ecc", "evaluate_decoder", "toric8_table_shorsyn"] 1.07 (5%) ❌ 1.00 (1%)
["stabilizer", "tensor", "diag_pow5_20"] 1.62 (5%) ❌ 1.00 (1%)

Benchmark Group List

Here's a list of all the benchmark groups executed by this job:

  • ["circuitsim", "compactification"]
  • ["circuitsim", "mctrajectories"]
  • ["circuitsim", "mctrajectories_sumtype"]
  • ["circuitsim", "mctrajectories_union"]
  • ["circuitsim", "pftrajectories"]
  • ["circuitsim", "pftrajectories_sumtype"]
  • ["circuitsim", "pftrajectories_union"]
  • ["clifford", "dense"]
  • ["clifford", "symbolic"]
  • ["ecc", "evaluate_decoder"]
  • ["pauli", "mul"]
  • ["stabilizer", "canon"]
  • ["stabilizer", "project"]
  • ["stabilizer", "tensor"]
  • ["stabilizer", "trace"]

Julia versioninfo

Target

Julia Version 1.12.0-DEV.427
Commit 6023ad67185 (2024-04-28 07:31 UTC)
Build Info:
 Official https://julialang.org/ release
Platform Info:
 OS: Linux (x86_64-linux-gnu)
 Ubuntu 22.04.4 LTS
 uname: Linux 6.5.0-1018-azure #19~22.04.2-Ubuntu SMP Thu Mar 21 16:45:46 UTC 2024 x86_64 x86_64
 CPU: AMD EPYC 7763 64-Core Processor: 
 speed user nice sys idle irq
 #1 0 MHz 2992 s 0 s 230 s 7822 s 0 s
 #2 0 MHz 3394 s 0 s 253 s 7415 s 0 s
 #3 0 MHz 2861 s 0 s 295 s 7893 s 0 s
 #4 0 MHz 2446 s 0 s 292 s 8324 s 0 s
 Memory: 15.606494903564453 GB (13334.81640625 MB free)
 Uptime: 1111.03 sec
 Load Avg: 1.02 1.07 0.86
 WORD_SIZE: 64
 LLVM: libLLVM-16.0.6 (ORCJIT, znver3)
Threads: 1 default, 0 interactive, 1 GC (on 4 virtual cores)

Baseline

Julia Version 1.12.0-DEV.427
Commit 6023ad67185 (2024-04-28 07:31 UTC)
Build Info:
 Official https://julialang.org/ release
Platform Info:
 OS: Linux (x86_64-linux-gnu)
 Ubuntu 22.04.4 LTS
 uname: Linux 6.5.0-1018-azure #19~22.04.2-Ubuntu SMP Thu Mar 21 16:45:46 UTC 2024 x86_64 x86_64
 CPU: AMD EPYC 7763 64-Core Processor: 
 speed user nice sys idle irq
 #1 0 MHz 4649 s 0 s 314 s 10991 s 0 s
 #2 0 MHz 4481 s 0 s 323 s 11167 s 0 s
 #3 0 MHz 4138 s 0 s 373 s 11449 s 0 s
 #4 0 MHz 3269 s 0 s 364 s 12339 s 0 s
 Memory: 15.606494903564453 GB (13244.25390625 MB free)
 Uptime: 1603.11 sec
 Load Avg: 1.12 1.06 0.96
 WORD_SIZE: 64
 LLVM: libLLVM-16.0.6 (ORCJIT, znver3)
Threads: 1 default, 0 interactive, 1 GC (on 4 virtual cores)

Target result

Benchmark Report for /home/runner/work/QuantumClifford.jl/QuantumClifford.jl

Job Properties

  • Time of benchmark: 29 Apr 2024 - 13:39
  • Package commit: dfc7a4
  • Julia commit: 6023ad
  • Julia command flags: None
  • Environment variables: None

Results

Below is a table of this job's results, obtained by running the benchmarks.
The values listed in the ID column have the structure [parent_group, child_group, ..., key], and can be used to
index into the BaseBenchmarks suite to retrieve the corresponding benchmarks.
The percentages accompanying time and memory values in the below table are noise tolerances. The "true"
time/memory value for a given benchmark is expected to fall within this percentage of the reported value.
An empty cell means that the value was zero.

ID time GC time memory allocations
["circuitsim", "compactification", "compact"] 7.764 ms (5%)
["circuitsim", "compactification", "no_compact"] 7.822 ms (5%) 281.25 KiB (1%) 6000
["circuitsim", "mctrajectories", "q1001_r1"] 15.221 ms (5%) 500.77 KiB (1%) 18019
["circuitsim", "mctrajectories", "q101_r1"] 172.472 μs (5%) 50.53 KiB (1%) 1818
["circuitsim", "mctrajectories_sumtype", "q1001_r1"] 13.574 ms (5%) 496 bytes (1%) 9
["circuitsim", "mctrajectories_sumtype", "q101_r1"] 119.062 μs (5%) 256 bytes (1%) 8
["circuitsim", "mctrajectories_union", "q1001_r1"] 13.599 ms (5%) 496 bytes (1%) 9
["circuitsim", "mctrajectories_union", "q101_r1"] 117.560 μs (5%) 256 bytes (1%) 8
["circuitsim", "pftrajectories", "q1001_r1"] 62.426 μs (5%) 93.80 KiB (1%) 2001
["circuitsim", "pftrajectories", "q1001_r100"] 177.893 μs (5%) 93.80 KiB (1%) 2001
["circuitsim", "pftrajectories", "q1001_r10000"] 1.129 ms (5%) 93.80 KiB (1%) 2001
["circuitsim", "pftrajectories", "q101_r1"] 6.381 μs (5%) 9.42 KiB (1%) 201
["circuitsim", "pftrajectories_sumtype", "q1001_r1"] 44.253 μs (5%)
["circuitsim", "pftrajectories_sumtype", "q1001_r100"] 157.244 μs (5%)
["circuitsim", "pftrajectories_sumtype", "q1001_r10000"] 1.102 ms (5%)
["circuitsim", "pftrajectories_sumtype", "q1001_r10000_fastrow"] 5.859 ms (5%)
["circuitsim", "pftrajectories_sumtype", "q101_r1"] 4.689 μs (5%)
["circuitsim", "pftrajectories_union", "q1001_r1"] 22.923 μs (5%) 96 bytes (1%) 2
["circuitsim", "pftrajectories_union", "q1001_r100"] 137.748 μs (5%) 96 bytes (1%) 2
["circuitsim", "pftrajectories_union", "q1001_r10000"] 1.082 ms (5%) 96 bytes (1%) 2
["circuitsim", "pftrajectories_union", "q101_r1"] 2.424 μs (5%) 96 bytes (1%) 2
["clifford", "dense", "cnot250_on_dense500_destab"] 11.593 ms (5%) 512 bytes (1%) 8
["clifford", "dense", "cnot250_on_dense500_stab"] 5.859 ms (5%) 512 bytes (1%) 8
["clifford", "dense", "cnot250_on_diag500_destab"] 1.124 ms (5%) 512 bytes (1%) 8
["clifford", "dense", "cnot250_on_diag500_stab"] 561.831 μs (5%) 512 bytes (1%) 8
["clifford", "dense", "cnot_on_dense500_destab"] 51.005 μs (5%) 368 bytes (1%) 10
["clifford", "dense", "cnot_on_dense500_stab"] 23.143 μs (5%) 368 bytes (1%) 10
["clifford", "dense", "cnot_on_diag500_destab"] 26.629 μs (5%) 368 bytes (1%) 10
["clifford", "dense", "cnot_on_diag500_stab"] 13.596 μs (5%) 368 bytes (1%) 10
["clifford", "dense", "dense500_on_dense500_destab"] 11.673 ms (5%) 512 bytes (1%) 8
["clifford", "dense", "dense500_on_dense500_stab"] 5.846 ms (5%) 512 bytes (1%) 8
["clifford", "dense", "dense500_on_diag500_destab"] 982.187 μs (5%) 512 bytes (1%) 8
["clifford", "dense", "dense500_on_diag500_stab"] 561.751 μs (5%) 512 bytes (1%) 8
["clifford", "symbolic", "cnot250_on_dense500_destab"] 1.440 ms (5%)
["clifford", "symbolic", "cnot250_on_dense500_stab"] 686.876 μs (5%)
["clifford", "symbolic", "cnot250_on_diag500_destab"] 1.161 ms (5%)
["clifford", "symbolic", "cnot250_on_diag500_stab"] 569.766 μs (5%)
["clifford", "symbolic", "cnot_on_dense500_destab"] 5.029 μs (5%)
["clifford", "symbolic", "cnot_on_dense500_stab"] 2.494 μs (5%)
["clifford", "symbolic", "cnot_on_diag500_destab"] 4.698 μs (5%)
["clifford", "symbolic", "cnot_on_diag500_stab"] 2.294 μs (5%)
["ecc", "evaluate_decoder", "shor_bp_comm"] 1.968 ms (5%) 1.77 MiB (1%) 42777
["ecc", "evaluate_decoder", "shor_bp_naivesyn"] 5.210 ms (5%) 3.63 MiB (1%) 81895
["ecc", "evaluate_decoder", "shor_bp_shorsyn"] 6.086 ms (5%) 3.72 MiB (1%) 83019
["ecc", "evaluate_decoder", "shor_pybp_comm"] 28.631 ms (5%) 3.97 MiB (1%) 116082
["ecc", "evaluate_decoder", "shor_pybp_naivesyn"] 59.306 ms (5%) 7.99 MiB (1%) 228127
["ecc", "evaluate_decoder", "shor_pybp_shorsyn"] 57.198 ms (5%) 8.07 MiB (1%) 229125
["ecc", "evaluate_decoder", "shor_table_comm"] 265.176 μs (5%) 241.42 KiB (1%) 4593
["ecc", "evaluate_decoder", "shor_table_naivesyn"] 1.124 ms (5%) 350.69 KiB (1%) 5149
["ecc", "evaluate_decoder", "shor_table_shorsyn"] 1.560 ms (5%) 440.03 KiB (1%) 6147
["ecc", "evaluate_decoder", "toric8_bp_comm"] 769.220 ms (5%) 32.188 ms 173.46 MiB (1%) 1039935
["ecc", "evaluate_decoder", "toric8_bp_naivesyn"] 1.606 s (5%) 55.696 ms 343.47 MiB (1%) 2092589
["ecc", "evaluate_decoder", "toric8_bp_shorsyn"] 1.578 s (5%) 77.372 ms 352.74 MiB (1%) 2166475
["ecc", "evaluate_decoder", "toric8_pybp_comm"] 408.439 ms (5%) 7.31 MiB (1%) 135571
["ecc", "evaluate_decoder", "toric8_pybp_naivesyn"] 841.116 ms (5%) 16.90 MiB (1%) 317594
["ecc", "evaluate_decoder", "toric8_pybp_shorsyn"] 856.380 ms (5%) 19.37 MiB (1%) 351510
["ecc", "evaluate_decoder", "toric8_pymatch_comm"] 4.407 ms (5%) 1.95 MiB (1%) 23176
["ecc", "evaluate_decoder", "toric8_pymatch_naivesyn"] 18.577 ms (5%) 6.03 MiB (1%) 92811
["ecc", "evaluate_decoder", "toric8_pymatch_shorsyn"] 28.292 ms (5%) 8.50 MiB (1%) 126727
["ecc", "evaluate_decoder", "toric8_table_comm"] 2.893 ms (5%) 1.64 MiB (1%) 23082
["ecc", "evaluate_decoder", "toric8_table_naivesyn"] 16.295 ms (5%) 5.38 MiB (1%) 92616
["ecc", "evaluate_decoder", "toric8_table_shorsyn"] 25.931 ms (5%) 7.85 MiB (1%) 126532
["pauli", "mul", "100"] 14.848 ns (5%)
["pauli", "mul", "1000"] 18.820 ns (5%)
["pauli", "mul", "100000"] 737.033 ns (5%)
["pauli", "mul", "20000000"] 284.232 μs (5%)
["stabilizer", "canon", "cano500"] 3.073 ms (5%)
["stabilizer", "canon", "diag_cano500"] 677.468 μs (5%)
["stabilizer", "canon", "diag_gott500"] 4.218 ms (5%) 5.19 MiB (1%) 34521
["stabilizer", "canon", "diag_rref500"] 679.104 μs (5%)
["stabilizer", "canon", "gott500"] 6.829 ms (5%) 5.19 MiB (1%) 34531
["stabilizer", "canon", "md_cano500"] 1.582 ms (5%)
["stabilizer", "canon", "md_rref500"] 1.602 ms (5%)
["stabilizer", "canon", "rref500"] 3.141 ms (5%)
["stabilizer", "project", "destabilizer"] 19.486 μs (5%) 288 bytes (1%) 5
["stabilizer", "project", "stabilizer"] 9.298 μs (5%) 80 bytes (1%) 2
["stabilizer", "tensor", "diag_pow5_20"] 2.863 ms (5%) 23.97 MiB (1%) 34
["stabilizer", "tensor", "pow5_20"] 3.206 μs (5%) 6.44 KiB (1%) 31
["stabilizer", "trace", "destabilizer"] 30.888 μs (5%) 80 bytes (1%) 2
["stabilizer", "trace", "stabilizer"] 24.316 μs (5%) 112 bytes (1%) 3

Benchmark Group List

Here's a list of all the benchmark groups executed by this job:

  • ["circuitsim", "compactification"]
  • ["circuitsim", "mctrajectories"]
  • ["circuitsim", "mctrajectories_sumtype"]
  • ["circuitsim", "mctrajectories_union"]
  • ["circuitsim", "pftrajectories"]
  • ["circuitsim", "pftrajectories_sumtype"]
  • ["circuitsim", "pftrajectories_union"]
  • ["clifford", "dense"]
  • ["clifford", "symbolic"]
  • ["ecc", "evaluate_decoder"]
  • ["pauli", "mul"]
  • ["stabilizer", "canon"]
  • ["stabilizer", "project"]
  • ["stabilizer", "tensor"]
  • ["stabilizer", "trace"]

Julia versioninfo

Julia Version 1.12.0-DEV.427
Commit 6023ad67185 (2024-04-28 07:31 UTC)
Build Info:
 Official https://julialang.org/ release
Platform Info:
 OS: Linux (x86_64-linux-gnu)
 Ubuntu 22.04.4 LTS
 uname: Linux 6.5.0-1018-azure #19~22.04.2-Ubuntu SMP Thu Mar 21 16:45:46 UTC 2024 x86_64 x86_64
 CPU: AMD EPYC 7763 64-Core Processor: 
 speed user nice sys idle irq
 #1 0 MHz 2992 s 0 s 230 s 7822 s 0 s
 #2 0 MHz 3394 s 0 s 253 s 7415 s 0 s
 #3 0 MHz 2861 s 0 s 295 s 7893 s 0 s
 #4 0 MHz 2446 s 0 s 292 s 8324 s 0 s
 Memory: 15.606494903564453 GB (13334.81640625 MB free)
 Uptime: 1111.03 sec
 Load Avg: 1.02 1.07 0.86
 WORD_SIZE: 64
 LLVM: libLLVM-16.0.6 (ORCJIT, znver3)
Threads: 1 default, 0 interactive, 1 GC (on 4 virtual cores)

Baseline result

Benchmark Report for /home/runner/work/QuantumClifford.jl/QuantumClifford.jl

Job Properties

  • Time of benchmark: 29 Apr 2024 - 13:47
  • Package commit: d6018f
  • Julia commit: 6023ad
  • Julia command flags: None
  • Environment variables: None

Results

Below is a table of this job's results, obtained by running the benchmarks.
The values listed in the ID column have the structure [parent_group, child_group, ..., key], and can be used to
index into the BaseBenchmarks suite to retrieve the corresponding benchmarks.
The percentages accompanying time and memory values in the below table are noise tolerances. The "true"
time/memory value for a given benchmark is expected to fall within this percentage of the reported value.
An empty cell means that the value was zero.

ID time GC time memory allocations
["circuitsim", "compactification", "compact"] 7.125 ms (5%)
["circuitsim", "compactification", "no_compact"] 7.354 ms (5%) 281.25 KiB (1%) 6000
["circuitsim", "mctrajectories", "q1001_r1"] 14.800 ms (5%) 500.77 KiB (1%) 18019
["circuitsim", "mctrajectories", "q101_r1"] 170.839 μs (5%) 50.53 KiB (1%) 1818
["circuitsim", "mctrajectories_sumtype", "q1001_r1"] 13.880 ms (5%) 496 bytes (1%) 9
["circuitsim", "mctrajectories_sumtype", "q101_r1"] 120.696 μs (5%) 256 bytes (1%) 8
["circuitsim", "mctrajectories_union", "q1001_r1"] 13.632 ms (5%) 496 bytes (1%) 9
["circuitsim", "mctrajectories_union", "q101_r1"] 118.311 μs (5%) 256 bytes (1%) 8
["circuitsim", "pftrajectories", "q1001_r1"] 58.379 μs (5%) 93.80 KiB (1%) 2001
["circuitsim", "pftrajectories", "q1001_r100"] 176.130 μs (5%) 93.80 KiB (1%) 2001
["circuitsim", "pftrajectories", "q1001_r10000"] 1.157 ms (5%) 93.80 KiB (1%) 2001
["circuitsim", "pftrajectories", "q101_r1"] 6.231 μs (5%) 9.42 KiB (1%) 201
["circuitsim", "pftrajectories_sumtype", "q1001_r1"] 43.091 μs (5%)
["circuitsim", "pftrajectories_sumtype", "q1001_r100"] 157.775 μs (5%)
["circuitsim", "pftrajectories_sumtype", "q1001_r10000"] 1.153 ms (5%)
["circuitsim", "pftrajectories_sumtype", "q1001_r10000_fastrow"] 5.828 ms (5%)
["circuitsim", "pftrajectories_sumtype", "q101_r1"] 4.538 μs (5%)
["circuitsim", "pftrajectories_union", "q1001_r1"] 22.923 μs (5%) 96 bytes (1%) 2
["circuitsim", "pftrajectories_union", "q1001_r100"] 137.928 μs (5%) 96 bytes (1%) 2
["circuitsim", "pftrajectories_union", "q1001_r10000"] 1.141 ms (5%) 96 bytes (1%) 2
["circuitsim", "pftrajectories_union", "q101_r1"] 2.454 μs (5%) 96 bytes (1%) 2
["clifford", "dense", "cnot250_on_dense500_destab"] 11.617 ms (5%) 512 bytes (1%) 8
["clifford", "dense", "cnot250_on_dense500_stab"] 5.842 ms (5%) 512 bytes (1%) 8
["clifford", "dense", "cnot250_on_diag500_destab"] 1.128 ms (5%) 512 bytes (1%) 8
["clifford", "dense", "cnot250_on_diag500_stab"] 561.941 μs (5%) 512 bytes (1%) 8
["clifford", "dense", "cnot_on_dense500_destab"] 50.384 μs (5%) 368 bytes (1%) 10
["clifford", "dense", "cnot_on_dense500_stab"] 23.634 μs (5%) 368 bytes (1%) 10
["clifford", "dense", "cnot_on_diag500_destab"] 26.660 μs (5%) 368 bytes (1%) 10
["clifford", "dense", "cnot_on_diag500_stab"] 13.476 μs (5%) 368 bytes (1%) 10
["clifford", "dense", "dense500_on_dense500_destab"] 11.619 ms (5%) 512 bytes (1%) 8
["clifford", "dense", "dense500_on_dense500_stab"] 5.835 ms (5%) 512 bytes (1%) 8
["clifford", "dense", "dense500_on_diag500_destab"] 986.846 μs (5%) 512 bytes (1%) 8
["clifford", "dense", "dense500_on_diag500_stab"] 562.192 μs (5%) 512 bytes (1%) 8
["clifford", "symbolic", "cnot250_on_dense500_destab"] 1.441 ms (5%)
["clifford", "symbolic", "cnot250_on_dense500_stab"] 686.785 μs (5%)
["clifford", "symbolic", "cnot250_on_diag500_destab"] 1.160 ms (5%)
["clifford", "symbolic", "cnot250_on_diag500_stab"] 572.670 μs (5%)
["clifford", "symbolic", "cnot_on_dense500_destab"] 5.029 μs (5%)
["clifford", "symbolic", "cnot_on_dense500_stab"] 2.374 μs (5%)
["clifford", "symbolic", "cnot_on_diag500_destab"] 4.669 μs (5%)
["clifford", "symbolic", "cnot_on_diag500_stab"] 2.304 μs (5%)
["ecc", "evaluate_decoder", "shor_bp_comm"] 1.906 ms (5%) 1.78 MiB (1%) 42805
["ecc", "evaluate_decoder", "shor_bp_naivesyn"] 4.542 ms (5%) 3.63 MiB (1%) 82119
["ecc", "evaluate_decoder", "shor_bp_shorsyn"] 8.294 ms (5%) 3.79 MiB (1%) 84755
["ecc", "evaluate_decoder", "shor_pybp_comm"] 27.514 ms (5%) 3.97 MiB (1%) 116082
["ecc", "evaluate_decoder", "shor_pybp_naivesyn"] 54.788 ms (5%) 7.99 MiB (1%) 228127
["ecc", "evaluate_decoder", "shor_pybp_shorsyn"] 57.825 ms (5%) 8.07 MiB (1%) 229125
["ecc", "evaluate_decoder", "shor_table_comm"] 257.802 μs (5%) 241.42 KiB (1%) 4593
["ecc", "evaluate_decoder", "shor_table_naivesyn"] 1.109 ms (5%) 350.69 KiB (1%) 5149
["ecc", "evaluate_decoder", "shor_table_shorsyn"] 1.550 ms (5%) 440.03 KiB (1%) 6147
["ecc", "evaluate_decoder", "toric8_bp_comm"] 713.279 ms (5%) 18.534 ms 163.64 MiB (1%) 982199
["ecc", "evaluate_decoder", "toric8_bp_naivesyn"] 1.582 s (5%) 57.312 ms 352.37 MiB (1%) 2144970
["ecc", "evaluate_decoder", "toric8_bp_shorsyn"] 1.578 s (5%) 39.956 ms 354.76 MiB (1%) 2178347
["ecc", "evaluate_decoder", "toric8_pybp_comm"] 410.541 ms (5%) 7.31 MiB (1%) 135571
["ecc", "evaluate_decoder", "toric8_pybp_naivesyn"] 863.475 ms (5%) 16.90 MiB (1%) 317594
["ecc", "evaluate_decoder", "toric8_pybp_shorsyn"] 852.706 ms (5%) 19.37 MiB (1%) 351510
["ecc", "evaluate_decoder", "toric8_pymatch_comm"] 4.367 ms (5%) 1.95 MiB (1%) 23176
["ecc", "evaluate_decoder", "toric8_pymatch_naivesyn"] 18.559 ms (5%) 6.03 MiB (1%) 92811
["ecc", "evaluate_decoder", "toric8_pymatch_shorsyn"] 27.853 ms (5%) 8.50 MiB (1%) 126727
["ecc", "evaluate_decoder", "toric8_table_comm"] 2.725 ms (5%) 1.64 MiB (1%) 23082
["ecc", "evaluate_decoder", "toric8_table_naivesyn"] 15.304 ms (5%) 5.38 MiB (1%) 92616
["ecc", "evaluate_decoder", "toric8_table_shorsyn"] 24.325 ms (5%) 7.85 MiB (1%) 126532
["pauli", "mul", "100"] 14.626 ns (5%)
["pauli", "mul", "1000"] 18.249 ns (5%)
["pauli", "mul", "100000"] 726.525 ns (5%)
["pauli", "mul", "20000000"] 281.827 μs (5%)
["stabilizer", "canon", "cano500"] 3.086 ms (5%)
["stabilizer", "canon", "diag_cano500"] 676.646 μs (5%)
["stabilizer", "canon", "diag_gott500"] 4.159 ms (5%) 5.19 MiB (1%) 34521
["stabilizer", "canon", "diag_rref500"] 686.605 μs (5%)
["stabilizer", "canon", "gott500"] 6.580 ms (5%) 5.19 MiB (1%) 34531
["stabilizer", "canon", "md_cano500"] 1.546 ms (5%)
["stabilizer", "canon", "md_rref500"] 1.562 ms (5%)
["stabilizer", "canon", "rref500"] 3.151 ms (5%)
["stabilizer", "project", "destabilizer"] 19.957 μs (5%) 288 bytes (1%) 5
["stabilizer", "project", "stabilizer"] 9.217 μs (5%) 80 bytes (1%) 2
["stabilizer", "tensor", "diag_pow5_20"] 1.771 ms (5%) 23.97 MiB (1%) 34
["stabilizer", "tensor", "pow5_20"] 3.361 μs (5%) 6.44 KiB (1%) 31
["stabilizer", "trace", "destabilizer"] 31.279 μs (5%) 80 bytes (1%) 2
["stabilizer", "trace", "stabilizer"] 24.085 μs (5%) 112 bytes (1%) 3

Benchmark Group List

Here's a list of all the benchmark groups executed by this job:

  • ["circuitsim", "compactification"]
  • ["circuitsim", "mctrajectories"]
  • ["circuitsim", "mctrajectories_sumtype"]
  • ["circuitsim", "mctrajectories_union"]
  • ["circuitsim", "pftrajectories"]
  • ["circuitsim", "pftrajectories_sumtype"]
  • ["circuitsim", "pftrajectories_union"]
  • ["clifford", "dense"]
  • ["clifford", "symbolic"]
  • ["ecc", "evaluate_decoder"]
  • ["pauli", "mul"]
  • ["stabilizer", "canon"]
  • ["stabilizer", "project"]
  • ["stabilizer", "tensor"]
  • ["stabilizer", "trace"]

Julia versioninfo

Julia Version 1.12.0-DEV.427
Commit 6023ad67185 (2024-04-28 07:31 UTC)
Build Info:
 Official https://julialang.org/ release
Platform Info:
 OS: Linux (x86_64-linux-gnu)
 Ubuntu 22.04.4 LTS
 uname: Linux 6.5.0-1018-azure #19~22.04.2-Ubuntu SMP Thu Mar 21 16:45:46 UTC 2024 x86_64 x86_64
 CPU: AMD EPYC 7763 64-Core Processor: 
 speed user nice sys idle irq
 #1 0 MHz 4649 s 0 s 314 s 10991 s 0 s
 #2 0 MHz 4481 s 0 s 323 s 11167 s 0 s
 #3 0 MHz 4138 s 0 s 373 s 11449 s 0 s
 #4 0 MHz 3269 s 0 s 364 s 12339 s 0 s
 Memory: 15.606494903564453 GB (13244.25390625 MB free)
 Uptime: 1603.11 sec
 Load Avg: 1.12 1.06 0.96
 WORD_SIZE: 64
 LLVM: libLLVM-16.0.6 (ORCJIT, znver3)
Threads: 1 default, 0 interactive, 1 GC (on 4 virtual cores)

Runtime information

Runtime Info
BLAS #threads 2
BLAS.vendor() lbt
Sys.CPU_THREADS 4

lscpu output:

Architecture: x86_64
CPU op-mode(s): 32-bit, 64-bit
Address sizes: 48 bits physical, 48 bits virtual
Byte Order: Little Endian
CPU(s): 4
On-line CPU(s) list: 0-3
Vendor ID: AuthenticAMD
Model name: AMD EPYC 7763 64-Core Processor
CPU family: 25
Model: 1
Thread(s) per core: 2
Core(s) per socket: 2
Socket(s): 1
Stepping: 1
BogoMIPS: 4890.85
Flags: fpu vme de pse tsc msr pae mce cx8 apic sep mtrr pge mca cmov pat pse36 clflush mmx fxsr sse sse2 ht syscall nx mmxext fxsr_opt pdpe1gb rdtscp lm constant_tsc rep_good nopl tsc_reliable nonstop_tsc cpuid extd_apicid aperfmperf pni pclmulqdq ssse3 fma cx16 pcid sse4_1 sse4_2 movbe popcnt aes xsave avx f16c rdrand hypervisor lahf_lm cmp_legacy svm cr8_legacy abm sse4a misalignsse 3dnowprefetch osvw topoext invpcid_single vmmcall fsgsbase bmi1 avx2 smep bmi2 erms invpcid rdseed adx smap clflushopt clwb sha_ni xsaveopt xsavec xgetbv1 xsaves clzero xsaveerptr rdpru arat npt nrip_save tsc_scale vmcb_clean flushbyasid decodeassists pausefilter pfthreshold v_vmsave_vmload umip vaes vpclmulqdq rdpid fsrm
Virtualization: AMD-V
Hypervisor vendor: Microsoft
Virtualization type: full
L1d cache: 64 KiB (2 instances)
L1i cache: 64 KiB (2 instances)
L2 cache: 1 MiB (2 instances)
L3 cache: 32 MiB (1 instance)
NUMA node(s): 1
NUMA node0 CPU(s): 0-3
Vulnerability Gather data sampling: Not affected
Vulnerability Itlb multihit: Not affected
Vulnerability L1tf: Not affected
Vulnerability Mds: Not affected
Vulnerability Meltdown: Not affected
Vulnerability Mmio stale data: Not affected
Vulnerability Retbleed: Not affected
Vulnerability Spec rstack overflow: Vulnerable: Safe RET, no microcode
Vulnerability Spec store bypass: Vulnerable
Vulnerability Spectre v1: Mitigation; usercopy/swapgs barriers and __user pointer sanitization
Vulnerability Spectre v2: Mitigation; Retpolines, STIBP disabled, RSB filling, PBRSB-eIBRS Not affected
Vulnerability Srbds: Not affected
Vulnerability Tsx async abort: Not affected

Cpu Property Value
Brand AMD EPYC 7763 64-Core Processor
Vendor :AMD
Architecture :Unknown
Model Family: 0xaf, Model: 0x01, Stepping: 0x01, Type: 0x00
Cores 16 physical cores, 16 logical cores (on executing CPU)
No Hyperthreading hardware capability detected
Clock Frequencies Not supported by CPU
Data Cache Level 1:3 : (32, 512, 32768) kbytes
64 byte cache line size
Address Size 48 bits virtual, 48 bits physical
SIMD 256 bit = 32 byte max. SIMD vector size
Time Stamp Counter TSC is accessible via rdtsc
TSC runs at constant rate (invariant from clock frequency)
Perf. Monitoring Performance Monitoring Counters (PMC) are not supported
Hypervisor Yes, Microsoft

@codecov Codecov
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codecov bot commented Apr 29, 2024

Codecov Report

All modified and coverable lines are covered by tests ✅

Project coverage is 82.03%. Comparing base (d6018f8) to head (f4a1e5b).

Additional details and impacted files 
@@            Coverage Diff             @@
##           master     #269      +/-   ##
==========================================
+ Coverage   82.01%   82.03%   +0.02%     
==========================================
  Files          58       58              
  Lines        3904     3903       -1     
==========================================
  Hits         3202     3202              
+ Misses        702      701       -1

☔ View full report in Codecov by Sentry.
📢 Have feedback on the report? Share it here.

@amicciche
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@amicciche , could you copy paste in a code block the entire stack trace for the installation failure you get on an ARM mac?

E.g. the result of

julia +1.10 --project=some_new_folder -tauto
] add QuantumClifford PyQDecoders
using QuantumClifford, PyQDecoders
versioninfo(verbose=true)

After executing

julia +1.10 --project=some_new_folder -tauto
] add QuantumClifford PyQDecoders

I got the following output:

micciche@vl965-172-31-45-184 some_new_folder % julia +1.10 --project=. -tauto              

               _
   _       _ _(_)_     |  Documentation: https://docs.julialang.org
  (_)     | (_) (_)    |
   _ _   _| |_  __ _   |  Type "?" for help, "]?" for Pkg help.
  | | | | | | |/ _` |  |
  | | |_| | | | (_| |  |  Version 1.10.2 (2024-03-01)
 _/ |\__'_|_|_|\__'_|  |  Official https://julialang.org/ release
|__/                   |

(some_new_folder) pkg> add QuantumClifford PyQDecoders
    Updating registry at `~/.julia/registries/General.toml`
   Resolving package versions...
   Installed Nemo ─ v0.43.3
    Updating `~/Research/QuantumInfo23/JuliaProjects/some_new_folder/Project.toml`
  [17f5de1a] + PyQDecoders v0.2.0
  [0525e862] + QuantumClifford v0.9.3
    Updating `~/Research/QuantumInfo23/JuliaProjects/some_new_folder/Manifest.toml`
⌅ [c3fe647b] + AbstractAlgebra v0.40.9
  [ec485272] + ArnoldiMethod v0.4.0
  [62783981] + BitTwiddlingConvenienceFunctions v0.1.5
  [861a8166] + Combinatorics v1.0.2
  [34da2185] + Compat v4.14.0
  [992eb4ea] + CondaPkg v0.2.22
  [9a962f9c] + DataAPI v1.16.0
  [864edb3b] + DataStructures v0.18.20
  [e2d170a0] + DataValueInterfaces v1.0.0
  [ffbed154] + DocStringExtensions v0.9.3
  [86223c79] + Graphs v1.10.0
  [3e5b6fbb] + HostCPUFeatures v0.1.16
  [2cd5bd5f] + ILog2 v0.2.4
  [615f187c] + IfElse v0.1.1
  [d25df0c9] + Inflate v0.1.4
  [82899510] + IteratorInterfaceExtensions v1.0.0
  [692b3bcd] + JLLWrappers v1.5.0
  [0f8b85d8] + JSON3 v1.14.0
  [1914dd2f] + MacroTools v0.5.13
  [0b3b1443] + MicroMamba v0.1.14
  [2edaba10] + Nemo v0.43.3
  [bac558e1] + OrderedCollections v1.6.3
  [69de0a69] + Parsers v2.8.1
  [fa939f87] + Pidfile v1.3.0
  [aea7be01] + PrecompileTools v1.2.1
  [21216c6a] + Preferences v1.4.3
  [17f5de1a] + PyQDecoders v0.2.0
  [6099a3de] + PythonCall v0.9.19
  [0525e862] + QuantumClifford v0.9.3
  [5717a53b] + QuantumInterface v0.3.4
  [fb686558] + RandomExtensions v0.4.4
  [ae029012] + Requires v1.3.0
  [fdea26ae] + SIMD v3.4.6
  [6c6a2e73] + Scratch v1.2.1
  [699a6c99] + SimpleTraits v0.9.4
  [aedffcd0] + Static v0.8.10
  [90137ffa] + StaticArrays v1.9.3
  [1e83bf80] + StaticArraysCore v1.4.2
  [856f2bd8] + StructTypes v1.10.0
  [8e1ec7a9] + SumTypes v0.5.6
  [3783bdb8] + TableTraits v1.0.1
  [bd369af6] + Tables v1.11.1
  [e17b2a0c] + UnsafePointers v1.0.0
  [e21ec000] + Antic_jll v0.201.500+0
  [d9960996] + Arb_jll v200.2300.0+0
  [fcfa6d1b] + Calcium_jll v0.401.100+0
⌅ [e134572f] + FLINT_jll v200.900.9+0
⌅ [656ef2d0] + OpenBLAS32_jll v0.3.24+0
  [f8abcde7] + micromamba_jll v1.5.8+0
  [0dad84c5] + ArgTools v1.1.1
  [56f22d72] + Artifacts
  [2a0f44e3] + Base64
  [ade2ca70] + Dates
  [8ba89e20] + Distributed
  [f43a241f] + Downloads v1.6.0
  [7b1f6079] + FileWatching
  [b77e0a4c] + InteractiveUtils
  [4af54fe1] + LazyArtifacts
  [b27032c2] + LibCURL v0.6.4
  [76f85450] + LibGit2
  [8f399da3] + Libdl
  [37e2e46d] + LinearAlgebra
  [56ddb016] + Logging
  [d6f4376e] + Markdown
  [a63ad114] + Mmap
  [ca575930] + NetworkOptions v1.2.0
  [44cfe95a] + Pkg v1.10.0
  [de0858da] + Printf
  [3fa0cd96] + REPL
  [9a3f8284] + Random
  [ea8e919c] + SHA v0.7.0
  [9e88b42a] + Serialization
  [1a1011a3] + SharedArrays
  [6462fe0b] + Sockets
  [2f01184e] + SparseArrays v1.10.0
  [10745b16] + Statistics v1.10.0
  [fa267f1f] + TOML v1.0.3
  [a4e569a6] + Tar v1.10.0
  [8dfed614] + Test
  [cf7118a7] + UUIDs
  [4ec0a83e] + Unicode
  [e66e0078] + CompilerSupportLibraries_jll v1.1.0+0
  [781609d7] + GMP_jll v6.2.1+6
  [deac9b47] + LibCURL_jll v8.4.0+0
  [e37daf67] + LibGit2_jll v1.6.4+0
  [29816b5a] + LibSSH2_jll v1.11.0+1
  [3a97d323] + MPFR_jll v4.2.0+1
  [c8ffd9c3] + MbedTLS_jll v2.28.2+1
  [14a3606d] + MozillaCACerts_jll v2023.1.10
  [4536629a] + OpenBLAS_jll v0.3.23+4
  [bea87d4a] + SuiteSparse_jll v7.2.1+1
  [83775a58] + Zlib_jll v1.2.13+1
  [8e850b90] + libblastrampoline_jll v5.8.0+1
  [8e850ede] + nghttp2_jll v1.52.0+1
  [3f19e933] + p7zip_jll v17.4.0+2
        Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m`
Precompiling project...
  ✗ PyQDecoders
  ✗ QuantumClifford → QuantumCliffordPyQDecodersExt
  2 dependencies successfully precompiled in 103 seconds. 59 already precompiled.
  2 dependencies errored.
  For a report of the errors see `julia> err`. To retry use `pkg> precompile`

(some_new_folder) pkg> err
ERROR: `err` is not a recognized command. Type ? for help with available commands

julia> err
PkgPrecompileError: The following 1 direct dependency failed to precompile:

PyQDecoders [17f5de1a-9b79-4409-a58d-4d45812840f7]

Failed to precompile PyQDecoders [17f5de1a-9b79-4409-a58d-4d45812840f7] to "/Users/micciche/.julia/compiled/v1.10/PyQDecoders/jl_sFtNFz".
    CondaPkg Found dependencies: /Users/micciche/.julia/packages/PythonCall/bb3ax/CondaPkg.toml
    CondaPkg Found dependencies: /Users/micciche/.julia/packages/PyQDecoders/nk69c/CondaPkg.toml
    CondaPkg Resolving changes
             + ldpc (pip)
             + numpy (pip)
             + pip
             + pymatching (pip)
             + python
             + scipy (pip)
    CondaPkg Creating environment
             │ /Users/micciche/.julia/artifacts/98aba21a6802e06a5d2e7c48633d7dc1c3d4a749/bin/micromamba
             │ -r /Users/micciche/.julia/scratchspaces/0b3b1443-0f03-428d-bdfb-f27f9c1191ea/root
             │ create
             │ -y
             │ -p /Users/micciche/Research/QuantumInfo23/JuliaProjects/some_new_folder/.CondaPkg/env
             │ --override-channels
             │ --no-channel-priority
             │ pip[version='>=22.0.0']
             │ python[version='>=3.7,<4',channel='conda-forge',build='*cpython*']
             └ -c conda-forge

Transaction

  Prefix: /Users/micciche/Research/QuantumInfo23/JuliaProjects/some_new_folder/.CondaPkg/env

  Updating specs:

   - pip[version='>=22.0.0']
   - conda-forge::python[version='>=3.7,<4',build=*cpython*]


  Package                 Version  Build               Channel           Size
───────────────────────────────────────────────────────────────────────────────
  Install:
───────────────────────────────────────────────────────────────────────────────

  + xz                      5.2.6  h57fd34a_0          conda-forge     Cached
  + libexpat                2.6.2  hebf3989_0          conda-forge     Cached
  + ncurses          6.4.20240210  h078ce10_0          conda-forge     Cached
  + bzip2                   1.0.8  h93a5062_5          conda-forge     Cached
  + libffi                  3.4.2  h3422bc3_5          conda-forge     Cached
  + libzlib                1.2.13  h53f4e23_5          conda-forge     Cached
  + ca-certificates      2024.2.2  hf0a4a13_0          conda-forge     Cached
  + readline                  8.2  h92ec313_1          conda-forge     Cached
  + tk                     8.6.13  h5083fa2_1          conda-forge     Cached
  + libsqlite              3.45.3  h091b4b1_0          conda-forge     Cached
  + openssl                 3.2.1  h0d3ecfb_1          conda-forge     Cached
  + tzdata                  2024a  h0c530f3_0          conda-forge     Cached
  + python                 3.12.3  h4a7b5fc_0_cpython  conda-forge     Cached
  + pip                      24.0  pyhd8ed1ab_0        conda-forge     Cached
  + setuptools             69.5.1  pyhd8ed1ab_0        conda-forge     Cached
  + wheel                  0.43.0  pyhd8ed1ab_1        conda-forge     Cached

  Summary:

  Install: 16 packages

  Total download: 0 B

───────────────────────────────────────────────────────────────────────────────



Transaction starting
Linking xz-5.2.6-h57fd34a_0
Linking libexpat-2.6.2-hebf3989_0
Linking ncurses-6.4.20240210-h078ce10_0
Linking bzip2-1.0.8-h93a5062_5
Linking libffi-3.4.2-h3422bc3_5
Linking libzlib-1.2.13-h53f4e23_5
Linking ca-certificates-2024.2.2-hf0a4a13_0
Linking readline-8.2-h92ec313_1
Linking tk-8.6.13-h5083fa2_1
Linking libsqlite-3.45.3-h091b4b1_0
Linking openssl-3.2.1-h0d3ecfb_1
Linking tzdata-2024a-h0c530f3_0
Linking python-3.12.3-h4a7b5fc_0_cpython
Linking pip-24.0-pyhd8ed1ab_0
Linking setuptools-69.5.1-pyhd8ed1ab_0
Linking wheel-0.43.0-pyhd8ed1ab_1

Transaction finished

To activate this environment, use:

    micromamba activate /Users/micciche/Research/QuantumInfo23/JuliaProjects/some_new_folder/.CondaPkg/env

Or to execute a single command in this environment, use:

    micromamba run -p /Users/micciche/Research/QuantumInfo23/JuliaProjects/some_new_folder/.CondaPkg/env mycommand

    CondaPkg Installing Pip packages
             │ /Users/micciche/Research/QuantumInfo23/JuliaProjects/some_new_folder/.CondaPkg/env/bin/pip
             │ install
             │ ldpc
             │ numpy
             │ pymatching
             └ scipy
Collecting ldpc
  Using cached ldpc-0.1.51.tar.gz (367 kB)
  Installing build dependencies: started
  Installing build dependencies: finished with status 'done'
  Getting requirements to build wheel: started
  Getting requirements to build wheel: finished with status 'done'
  Installing backend dependencies: started
  Installing backend dependencies: finished with status 'done'
  Preparing metadata (pyproject.toml): started
  Preparing metadata (pyproject.toml): finished with status 'done'
Collecting numpy
  Using cached numpy-1.26.4-cp312-cp312-macosx_11_0_arm64.whl.metadata (61 kB)
Collecting pymatching
  Using cached PyMatching-2.2.0-cp312-cp312-macosx_11_0_arm64.whl.metadata (16 kB)
Collecting scipy
  Using cached scipy-1.13.0-cp312-cp312-macosx_12_0_arm64.whl.metadata (60 kB)
Collecting tqdm (from ldpc)
  Using cached tqdm-4.66.2-py3-none-any.whl.metadata (57 kB)
Collecting networkx (from pymatching)
  Using cached networkx-3.3-py3-none-any.whl.metadata (5.1 kB)
Collecting matplotlib (from pymatching)
  Using cached matplotlib-3.8.4-cp312-cp312-macosx_11_0_arm64.whl.metadata (5.8 kB)
Collecting contourpy>=1.0.1 (from matplotlib->pymatching)
  Using cached contourpy-1.2.1-cp312-cp312-macosx_11_0_arm64.whl.metadata (5.8 kB)
Collecting cycler>=0.10 (from matplotlib->pymatching)
  Using cached cycler-0.12.1-py3-none-any.whl.metadata (3.8 kB)
Collecting fonttools>=4.22.0 (from matplotlib->pymatching)
  Using cached fonttools-4.51.0-cp312-cp312-macosx_10_9_universal2.whl.metadata (159 kB)
Collecting kiwisolver>=1.3.1 (from matplotlib->pymatching)
  Using cached kiwisolver-1.4.5-cp312-cp312-macosx_11_0_arm64.whl.metadata (6.4 kB)
Collecting packaging>=20.0 (from matplotlib->pymatching)
  Using cached packaging-24.0-py3-none-any.whl.metadata (3.2 kB)
Collecting pillow>=8 (from matplotlib->pymatching)
  Using cached pillow-10.3.0-cp312-cp312-macosx_11_0_arm64.whl.metadata (9.2 kB)
Collecting pyparsing>=2.3.1 (from matplotlib->pymatching)
  Using cached pyparsing-3.1.2-py3-none-any.whl.metadata (5.1 kB)
Collecting python-dateutil>=2.7 (from matplotlib->pymatching)
  Using cached python_dateutil-2.9.0.post0-py2.py3-none-any.whl.metadata (8.4 kB)
Collecting six>=1.5 (from python-dateutil>=2.7->matplotlib->pymatching)
  Using cached six-1.16.0-py2.py3-none-any.whl.metadata (1.8 kB)
Using cached numpy-1.26.4-cp312-cp312-macosx_11_0_arm64.whl (13.7 MB)
Using cached PyMatching-2.2.0-cp312-cp312-macosx_11_0_arm64.whl (365 kB)
Using cached scipy-1.13.0-cp312-cp312-macosx_12_0_arm64.whl (30.4 MB)
Using cached matplotlib-3.8.4-cp312-cp312-macosx_11_0_arm64.whl (7.5 MB)
Using cached networkx-3.3-py3-none-any.whl (1.7 MB)
Using cached tqdm-4.66.2-py3-none-any.whl (78 kB)
Using cached contourpy-1.2.1-cp312-cp312-macosx_11_0_arm64.whl (245 kB)
Using cached cycler-0.12.1-py3-none-any.whl (8.3 kB)
Using cached fonttools-4.51.0-cp312-cp312-macosx_10_9_universal2.whl (2.8 MB)
Using cached kiwisolver-1.4.5-cp312-cp312-macosx_11_0_arm64.whl (64 kB)
Using cached packaging-24.0-py3-none-any.whl (53 kB)
Using cached pillow-10.3.0-cp312-cp312-macosx_11_0_arm64.whl (3.4 MB)
Using cached pyparsing-3.1.2-py3-none-any.whl (103 kB)
Using cached python_dateutil-2.9.0.post0-py2.py3-none-any.whl (229 kB)
Using cached six-1.16.0-py2.py3-none-any.whl (11 kB)
Building wheels for collected packages: ldpc
  Building wheel for ldpc (pyproject.toml): started
  Building wheel for ldpc (pyproject.toml): finished with status 'error'
  error: subprocess-exited-with-error
  
  × Building wheel for ldpc (pyproject.toml) did not run successfully.
  │ exit code: 1
  ╰─> [85 lines of output]
      running bdist_wheel
      running build
      running build_py
      creating build
      creating build/lib.macosx-11.0-arm64-cpython-312
      creating build/lib.macosx-11.0-arm64-cpython-312/ldpc
      copying src/ldpc/codes.py -> build/lib.macosx-11.0-arm64-cpython-312/ldpc
      copying src/ldpc/protograph.py -> build/lib.macosx-11.0-arm64-cpython-312/ldpc
      copying src/ldpc/__init__.py -> build/lib.macosx-11.0-arm64-cpython-312/ldpc
      copying src/ldpc/mod2.py -> build/lib.macosx-11.0-arm64-cpython-312/ldpc
      copying src/ldpc/code_util.py -> build/lib.macosx-11.0-arm64-cpython-312/ldpc
      copying src/ldpc/alist.py -> build/lib.macosx-11.0-arm64-cpython-312/ldpc
      copying src/ldpc/bp_decode_sim.py -> build/lib.macosx-11.0-arm64-cpython-312/ldpc
      creating build/lib.macosx-11.0-arm64-cpython-312/ldpc/tests
      copying src/ldpc/tests/test_ring_of_circulants_f2.py -> build/lib.macosx-11.0-arm64-cpython-312/ldpc/tests
      copying src/ldpc/tests/test_protograph.py -> build/lib.macosx-11.0-arm64-cpython-312/ldpc/tests
      running egg_info
      writing src/ldpc.egg-info/PKG-INFO
      writing dependency_links to src/ldpc.egg-info/dependency_links.txt
      writing requirements to src/ldpc.egg-info/requires.txt
      writing top-level names to src/ldpc.egg-info/top_level.txt
      dependency /private/var/folders/w2/fgml03ld4zg98n4p23qrvzcc0000gn/T/pip-build-env-am32y042/overlay/lib/python3.12/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
      dependency /private/var/folders/w2/fgml03ld4zg98n4p23qrvzcc0000gn/T/pip-build-env-am32y042/overlay/lib/python3.12/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
      dependency /private/var/folders/w2/fgml03ld4zg98n4p23qrvzcc0000gn/T/pip-build-env-am32y042/overlay/lib/python3.12/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
      dependency /private/var/folders/w2/fgml03ld4zg98n4p23qrvzcc0000gn/T/pip-build-env-am32y042/overlay/lib/python3.12/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
      dependency /private/var/folders/w2/fgml03ld4zg98n4p23qrvzcc0000gn/T/pip-build-env-am32y042/overlay/lib/python3.12/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
      dependency /private/var/folders/w2/fgml03ld4zg98n4p23qrvzcc0000gn/T/pip-build-env-am32y042/overlay/lib/python3.12/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
      dependency /private/var/folders/w2/fgml03ld4zg98n4p23qrvzcc0000gn/T/pip-build-env-am32y042/overlay/lib/python3.12/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
      dependency /private/var/folders/w2/fgml03ld4zg98n4p23qrvzcc0000gn/T/pip-build-env-am32y042/overlay/lib/python3.12/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
      dependency /private/var/folders/w2/fgml03ld4zg98n4p23qrvzcc0000gn/T/pip-build-env-am32y042/overlay/lib/python3.12/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
      dependency /private/var/folders/w2/fgml03ld4zg98n4p23qrvzcc0000gn/T/pip-build-env-am32y042/overlay/lib/python3.12/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
      dependency /private/var/folders/w2/fgml03ld4zg98n4p23qrvzcc0000gn/T/pip-build-env-am32y042/overlay/lib/python3.12/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
      dependency /private/var/folders/w2/fgml03ld4zg98n4p23qrvzcc0000gn/T/pip-build-env-am32y042/overlay/lib/python3.12/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
      dependency /private/var/folders/w2/fgml03ld4zg98n4p23qrvzcc0000gn/T/pip-build-env-am32y042/overlay/lib/python3.12/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
      dependency /private/var/folders/w2/fgml03ld4zg98n4p23qrvzcc0000gn/T/pip-build-env-am32y042/overlay/lib/python3.12/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
      dependency /private/var/folders/w2/fgml03ld4zg98n4p23qrvzcc0000gn/T/pip-build-env-am32y042/overlay/lib/python3.12/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
      dependency /private/var/folders/w2/fgml03ld4zg98n4p23qrvzcc0000gn/T/pip-build-env-am32y042/overlay/lib/python3.12/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
      dependency /private/var/folders/w2/fgml03ld4zg98n4p23qrvzcc0000gn/T/pip-build-env-am32y042/overlay/lib/python3.12/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
      dependency /private/var/folders/w2/fgml03ld4zg98n4p23qrvzcc0000gn/T/pip-build-env-am32y042/overlay/lib/python3.12/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
      dependency /private/var/folders/w2/fgml03ld4zg98n4p23qrvzcc0000gn/T/pip-build-env-am32y042/overlay/lib/python3.12/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
      dependency /private/var/folders/w2/fgml03ld4zg98n4p23qrvzcc0000gn/T/pip-build-env-am32y042/overlay/lib/python3.12/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
      reading manifest file 'src/ldpc.egg-info/SOURCES.txt'
      reading manifest template 'MANIFEST.in'
      warning: no files found matching 'src/ldpc/README.md'
      warning: no files found matching 'src/ldpc/LICENSE'
      adding license file 'LICENSE'
      writing manifest file 'src/ldpc.egg-info/SOURCES.txt'
      copying src/ldpc/VERSION -> build/lib.macosx-11.0-arm64-cpython-312/ldpc
      copying src/ldpc/__init__.pxd -> build/lib.macosx-11.0-arm64-cpython-312/ldpc
      copying src/ldpc/bp_decoder.c -> build/lib.macosx-11.0-arm64-cpython-312/ldpc
      copying src/ldpc/bp_decoder.pxd -> build/lib.macosx-11.0-arm64-cpython-312/ldpc
      copying src/ldpc/bp_decoder.pyx -> build/lib.macosx-11.0-arm64-cpython-312/ldpc
      copying src/ldpc/c_util.c -> build/lib.macosx-11.0-arm64-cpython-312/ldpc
      copying src/ldpc/c_util.pxd -> build/lib.macosx-11.0-arm64-cpython-312/ldpc
      copying src/ldpc/c_util.pyx -> build/lib.macosx-11.0-arm64-cpython-312/ldpc
      copying src/ldpc/mod2sparse.c -> build/lib.macosx-11.0-arm64-cpython-312/ldpc
      copying src/ldpc/mod2sparse.pxd -> build/lib.macosx-11.0-arm64-cpython-312/ldpc
      copying src/ldpc/mod2sparse.pyx -> build/lib.macosx-11.0-arm64-cpython-312/ldpc
      copying src/ldpc/osd.c -> build/lib.macosx-11.0-arm64-cpython-312/ldpc
      copying src/ldpc/osd.pxd -> build/lib.macosx-11.0-arm64-cpython-312/ldpc
      copying src/ldpc/osd.pyx -> build/lib.macosx-11.0-arm64-cpython-312/ldpc
      creating build/lib.macosx-11.0-arm64-cpython-312/ldpc/include
      copying src/ldpc/include/COPYRIGHT -> build/lib.macosx-11.0-arm64-cpython-312/ldpc/include
      copying src/ldpc/include/README.md -> build/lib.macosx-11.0-arm64-cpython-312/ldpc/include
      copying src/ldpc/include/binary_char.c -> build/lib.macosx-11.0-arm64-cpython-312/ldpc/include
      copying src/ldpc/include/binary_char.h -> build/lib.macosx-11.0-arm64-cpython-312/ldpc/include
      copying src/ldpc/include/mod2sparse.c -> build/lib.macosx-11.0-arm64-cpython-312/ldpc/include
      copying src/ldpc/include/mod2sparse.h -> build/lib.macosx-11.0-arm64-cpython-312/ldpc/include
      copying src/ldpc/include/mod2sparse_extra.c -> build/lib.macosx-11.0-arm64-cpython-312/ldpc/include
      copying src/ldpc/include/mod2sparse_extra.h -> build/lib.macosx-11.0-arm64-cpython-312/ldpc/include
      copying src/ldpc/include/sort.c -> build/lib.macosx-11.0-arm64-cpython-312/ldpc/include
      copying src/ldpc/include/sort.h -> build/lib.macosx-11.0-arm64-cpython-312/ldpc/include
      running build_ext
      building 'ldpc.bp_decoder' extension
      creating build/temp.macosx-11.0-arm64-cpython-312
      creating build/temp.macosx-11.0-arm64-cpython-312/src
      creating build/temp.macosx-11.0-arm64-cpython-312/src/ldpc
      creating build/temp.macosx-11.0-arm64-cpython-312/src/ldpc/include
      /usr/local/opt/llvm/bin/clang -fno-strict-overflow -DNDEBUG -O2 -Wall -fPIC -O2 -isystem /Users/micciche/Research/QuantumInfo23/JuliaProjects/some_new_folder/.CondaPkg/env/include -arch arm64 -fPIC -O2 -isystem /Users/micciche/Research/QuantumInfo23/JuliaProjects/some_new_folder/.CondaPkg/env/include -arch arm64 -I/usr/local/opt/llvm/include -I/private/var/folders/w2/fgml03ld4zg98n4p23qrvzcc0000gn/T/pip-build-env-am32y042/overlay/lib/python3.12/site-packages/numpy/core/include -Isrc/ldpc/include -I/Users/micciche/Research/QuantumInfo23/JuliaProjects/some_new_folder/.CondaPkg/env/include/python3.12 -c src/ldpc/bp_decoder.c -o build/temp.macosx-11.0-arm64-cpython-312/src/ldpc/bp_decoder.o -std=c11
      In file included from src/ldpc/bp_decoder.c:47:
      /Users/micciche/Research/QuantumInfo23/JuliaProjects/some_new_folder/.CondaPkg/env/include/python3.12/Python.h:23:12: fatal error: 'stdlib.h' file not found
      #  include <stdlib.h>
                 ^~~~~~~~~~
      1 error generated.
      error: command '/usr/local/opt/llvm/bin/clang' failed with exit code 1
      [end of output]
  
  note: This error originates from a subprocess, and is likely not a problem with pip.
  ERROR: Failed building wheel for ldpc
Failed to build ldpc
ERROR: Could not build wheels for ldpc, which is required to install pyproject.toml-based projects
ERROR: LoadError: InitError: failed process: Process(`/Users/micciche/Research/QuantumInfo23/JuliaProjects/some_new_folder/.CondaPkg/env/bin/pip install ldpc numpy pymatching scipy`, ProcessExited(1)) [1]

Stacktrace:
  [1] pipeline_error
    @ ./process.jl:565 [inlined]
  [2] run(::Cmd; wait::Bool)
    @ Base ./process.jl:480
  [3] run(::Cmd)
    @ Base ./process.jl:477
  [4] _run(io::IO, cmd::Cmd, args::Any; flags::Any)
    @ CondaPkg ~/.julia/packages/CondaPkg/MmzxM/src/resolve.jl:398
  [5] (::CondaPkg.var"#37#38"{IOContext{Base.PipeEndpoint}, Vector{String}, Vector{String}, Vector{String}})()
    @ CondaPkg ~/.julia/packages/CondaPkg/MmzxM/src/resolve.jl:332
  [6] withenv(f::Function)
    @ CondaPkg ~/.julia/packages/CondaPkg/MmzxM/src/env.jl:44
  [7] _resolve_pip_install(io::Any, pip_specs::Any, load_path::Any)
    @ CondaPkg ~/.julia/packages/CondaPkg/MmzxM/src/resolve.jl:329
  [8] resolve(; force::Bool, io::IO, interactive::Bool, dry_run::Bool)
    @ CondaPkg ~/.julia/packages/CondaPkg/MmzxM/src/resolve.jl:549
  [9] resolve()
    @ CondaPkg ~/.julia/packages/CondaPkg/MmzxM/src/resolve.jl:405
 [10] envdir()
    @ CondaPkg ~/.julia/packages/CondaPkg/MmzxM/src/env.jl:70
 [11] init_context()
    @ PythonCall.C ~/.julia/packages/PythonCall/bb3ax/src/C/context.jl:63
 [12] __init__()
    @ PythonCall.C ~/.julia/packages/PythonCall/bb3ax/src/C/C.jl:23
 [13] run_module_init(mod::Module, i::Int64)
    @ Base ./loading.jl:1134
 [14] register_restored_modules(sv::Core.SimpleVector, pkg::Base.PkgId, path::String)
    @ Base ./loading.jl:1122
 [15] _include_from_serialized(pkg::Base.PkgId, path::String, ocachepath::String, depmods::Vector{Any})
    @ Base ./loading.jl:1067
 [16] _require_search_from_serialized(pkg::Base.PkgId, sourcepath::String, build_id::UInt128)
    @ Base ./loading.jl:1581
 [17] _require(pkg::Base.PkgId, env::String)
    @ Base ./loading.jl:1938
 [18] __require_prelocked(uuidkey::Base.PkgId, env::String)
    @ Base ./loading.jl:1812
 [19] #invoke_in_world#3
    @ ./essentials.jl:926 [inlined]
 [20] invoke_in_world
    @ ./essentials.jl:923 [inlined]
 [21] _require_prelocked(uuidkey::Base.PkgId, env::String)
    @ Base ./loading.jl:1803
 [22] macro expansion
    @ ./loading.jl:1790 [inlined]
 [23] macro expansion
    @ ./lock.jl:267 [inlined]
 [24] __require(into::Module, mod::Symbol)
    @ Base ./loading.jl:1753
 [25] #invoke_in_world#3
    @ ./essentials.jl:926 [inlined]
 [26] invoke_in_world
    @ ./essentials.jl:923 [inlined]
 [27] require(into::Module, mod::Symbol)
    @ Base ./loading.jl:1746
 [28] include
    @ ./Base.jl:495 [inlined]
 [29] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)
    @ Base ./loading.jl:2222
 [30] top-level scope
    @ stdin:3
during initialization of module C
in expression starting at /Users/micciche/.julia/packages/PyQDecoders/nk69c/src/PyQDecoders.jl:1
in expression starting at stdin:

@amicciche
Copy link
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Here is the output of

using QuantumClifford, PyQDecoders
versioninfo(verbose=true)

julia> using QuantumClifford, PyQDecoders
Precompiling PyQDecoders
        Info Given PyQDecoders was explicitly requested, output will be shown live 
    CondaPkg Found dependencies: /Users/micciche/.julia/packages/PythonCall/bb3ax/CondaPkg.toml
    CondaPkg Found dependencies: /Users/micciche/.julia/packages/PyQDecoders/nk69c/CondaPkg.toml
    CondaPkg Resolving changes
             + ldpc (pip)
             + numpy (pip)
             + pip
             + pymatching (pip)
             + python
             + scipy (pip)
    CondaPkg Removing environment
             │ /Users/micciche/.julia/artifacts/98aba21a6802e06a5d2e7c48633d7dc1c3d4a749/bin/micromamba
             │ -r /Users/micciche/.julia/scratchspaces/0b3b1443-0f03-428d-bdfb-f27f9c1191ea/root
             │ remove
             │ -y
             │ -p /Users/micciche/Research/QuantumInfo23/JuliaProjects/some_new_folder/.CondaPkg/env
             └ --all
Transaction

  Prefix: /Users/micciche/Research/QuantumInfo23/JuliaProjects/some_new_folder/.CondaPkg/env

  Removing specs:

   - bzip2
   - ca-certificates
   - libexpat
   - libffi
   - libsqlite
   - libzlib
   - ncurses
   - openssl
   - pip
   - python
   - readline
   - setuptools
   - tk
   - tzdata
   - wheel
   - xz


  Package                 Version  Build               Channel           Size
───────────────────────────────────────────────────────────────────────────────
  Remove:
───────────────────────────────────────────────────────────────────────────────

  - pip                      24.0  pyhd8ed1ab_0        conda-forge     Cached
  - python                 3.12.3  h4a7b5fc_0_cpython  conda-forge     Cached
  - setuptools             69.5.1  pyhd8ed1ab_0        conda-forge     Cached
  - wheel                  0.43.0  pyhd8ed1ab_1        conda-forge     Cached
  - xz                      5.2.6  h57fd34a_0          conda-forge     Cached
  - tzdata                  2024a  h0c530f3_0          conda-forge     Cached
  - tk                     8.6.13  h5083fa2_1          conda-forge     Cached
  - readline                  8.2  h92ec313_1          conda-forge     Cached
  - openssl                 3.2.1  h0d3ecfb_1          conda-forge     Cached
  - libsqlite              3.45.3  h091b4b1_0          conda-forge     Cached
  - libffi                  3.4.2  h3422bc3_5          conda-forge     Cached
  - libexpat                2.6.2  hebf3989_0          conda-forge     Cached
  - bzip2                   1.0.8  h93a5062_5          conda-forge     Cached
  - ncurses          6.4.20240210  h078ce10_0          conda-forge     Cached
  - ca-certificates      2024.2.2  hf0a4a13_0          conda-forge     Cached
  - libzlib                1.2.13  h53f4e23_5          conda-forge     Cached

  Summary:

  Remove: 16 packages

  Total download: 0 B

───────────────────────────────────────────────────────────────────────────────



Transaction starting
Unlinking pip-24.0-pyhd8ed1ab_0
Unlinking python-3.12.3-h4a7b5fc_0_cpython
Unlinking setuptools-69.5.1-pyhd8ed1ab_0
Unlinking wheel-0.43.0-pyhd8ed1ab_1
Unlinking xz-5.2.6-h57fd34a_0
Unlinking tzdata-2024a-h0c530f3_0
Unlinking tk-8.6.13-h5083fa2_1
Unlinking readline-8.2-h92ec313_1
Unlinking openssl-3.2.1-h0d3ecfb_1
Unlinking libsqlite-3.45.3-h091b4b1_0
Unlinking libffi-3.4.2-h3422bc3_5
Unlinking libexpat-2.6.2-hebf3989_0
Unlinking bzip2-1.0.8-h93a5062_5
Unlinking ncurses-6.4.20240210-h078ce10_0
Unlinking ca-certificates-2024.2.2-hf0a4a13_0
Unlinking libzlib-1.2.13-h53f4e23_5

Transaction finished

To activate this environment, use:

    micromamba activate /Users/micciche/Research/QuantumInfo23/JuliaProjects/some_new_folder/.CondaPkg/env

Or to execute a single command in this environment, use:

    micromamba run -p /Users/micciche/Research/QuantumInfo23/JuliaProjects/some_new_folder/.CondaPkg/env mycommand

    CondaPkg Creating environment
             │ /Users/micciche/.julia/artifacts/98aba21a6802e06a5d2e7c48633d7dc1c3d4a749/bin/micromamba
             │ -r /Users/micciche/.julia/scratchspaces/0b3b1443-0f03-428d-bdfb-f27f9c1191ea/root
             │ create
             │ -y
             │ -p /Users/micciche/Research/QuantumInfo23/JuliaProjects/some_new_folder/.CondaPkg/env
             │ --override-channels
             │ --no-channel-priority
             │ pip[version='>=22.0.0']
             │ python[version='>=3.7,<4',channel='conda-forge',build='*cpython*']
             └ -c conda-forge
conda-forge/osx-arm64                                       Using cache
conda-forge/noarch                                          Using cache

Transaction

  Prefix: /Users/micciche/Research/QuantumInfo23/JuliaProjects/some_new_folder/.CondaPkg/env

  Updating specs:

   - pip[version='>=22.0.0']
   - conda-forge::python[version='>=3.7,<4',build=*cpython*]


  Package                 Version  Build               Channel           Size
───────────────────────────────────────────────────────────────────────────────
  Install:
───────────────────────────────────────────────────────────────────────────────

  + xz                      5.2.6  h57fd34a_0          conda-forge     Cached
  + libexpat                2.6.2  hebf3989_0          conda-forge     Cached
  + ncurses          6.4.20240210  h078ce10_0          conda-forge     Cached
  + bzip2                   1.0.8  h93a5062_5          conda-forge     Cached
  + libffi                  3.4.2  h3422bc3_5          conda-forge     Cached
  + libzlib                1.2.13  h53f4e23_5          conda-forge     Cached
  + ca-certificates      2024.2.2  hf0a4a13_0          conda-forge     Cached
  + readline                  8.2  h92ec313_1          conda-forge     Cached
  + tk                     8.6.13  h5083fa2_1          conda-forge     Cached
  + libsqlite              3.45.3  h091b4b1_0          conda-forge     Cached
  + openssl                 3.2.1  h0d3ecfb_1          conda-forge     Cached
  + tzdata                  2024a  h0c530f3_0          conda-forge     Cached
  + python                 3.12.3  h4a7b5fc_0_cpython  conda-forge     Cached
  + wheel                  0.43.0  pyhd8ed1ab_1        conda-forge     Cached
  + setuptools             69.5.1  pyhd8ed1ab_0        conda-forge     Cached
  + pip                      24.0  pyhd8ed1ab_0        conda-forge     Cached

  Summary:

  Install: 16 packages

  Total download: 0 B

───────────────────────────────────────────────────────────────────────────────



Transaction starting
Linking xz-5.2.6-h57fd34a_0
Linking libexpat-2.6.2-hebf3989_0
Linking ncurses-6.4.20240210-h078ce10_0
Linking bzip2-1.0.8-h93a5062_5
Linking libffi-3.4.2-h3422bc3_5
Linking libzlib-1.2.13-h53f4e23_5
Linking ca-certificates-2024.2.2-hf0a4a13_0
Linking readline-8.2-h92ec313_1
Linking tk-8.6.13-h5083fa2_1
Linking libsqlite-3.45.3-h091b4b1_0
Linking openssl-3.2.1-h0d3ecfb_1
Linking tzdata-2024a-h0c530f3_0
Linking python-3.12.3-h4a7b5fc_0_cpython
Linking wheel-0.43.0-pyhd8ed1ab_1
Linking setuptools-69.5.1-pyhd8ed1ab_0
Linking pip-24.0-pyhd8ed1ab_0

Transaction finished

To activate this environment, use:

    micromamba activate /Users/micciche/Research/QuantumInfo23/JuliaProjects/some_new_folder/.CondaPkg/env

Or to execute a single command in this environment, use:

    micromamba run -p /Users/micciche/Research/QuantumInfo23/JuliaProjects/some_new_folder/.CondaPkg/env mycommand

    CondaPkg Installing Pip packages
             │ /Users/micciche/Research/QuantumInfo23/JuliaProjects/some_new_folder/.CondaPkg/env/bin/pip
             │ install
             │ ldpc
             │ numpy
             │ pymatching
             └ scipy
Collecting ldpc
  Using cached ldpc-0.1.51.tar.gz (367 kB)
  Installing build dependencies: started
  Installing build dependencies: finished with status 'done'
  Getting requirements to build wheel: started
  Getting requirements to build wheel: finished with status 'done'
  Installing backend dependencies: started
  Installing backend dependencies: finished with status 'done'
  Preparing metadata (pyproject.toml): started
  Preparing metadata (pyproject.toml): finished with status 'done'
Collecting numpy
  Using cached numpy-1.26.4-cp312-cp312-macosx_11_0_arm64.whl.metadata (61 kB)
Collecting pymatching
  Using cached PyMatching-2.2.0-cp312-cp312-macosx_11_0_arm64.whl.metadata (16 kB)
Collecting scipy
  Using cached scipy-1.13.0-cp312-cp312-macosx_12_0_arm64.whl.metadata (60 kB)
Collecting tqdm (from ldpc)
  Using cached tqdm-4.66.2-py3-none-any.whl.metadata (57 kB)
Collecting networkx (from pymatching)
  Using cached networkx-3.3-py3-none-any.whl.metadata (5.1 kB)
Collecting matplotlib (from pymatching)
  Using cached matplotlib-3.8.4-cp312-cp312-macosx_11_0_arm64.whl.metadata (5.8 kB)
Collecting contourpy>=1.0.1 (from matplotlib->pymatching)
  Using cached contourpy-1.2.1-cp312-cp312-macosx_11_0_arm64.whl.metadata (5.8 kB)
Collecting cycler>=0.10 (from matplotlib->pymatching)
  Using cached cycler-0.12.1-py3-none-any.whl.metadata (3.8 kB)
Collecting fonttools>=4.22.0 (from matplotlib->pymatching)
  Using cached fonttools-4.51.0-cp312-cp312-macosx_10_9_universal2.whl.metadata (159 kB)
Collecting kiwisolver>=1.3.1 (from matplotlib->pymatching)
  Using cached kiwisolver-1.4.5-cp312-cp312-macosx_11_0_arm64.whl.metadata (6.4 kB)
Collecting packaging>=20.0 (from matplotlib->pymatching)
  Using cached packaging-24.0-py3-none-any.whl.metadata (3.2 kB)
Collecting pillow>=8 (from matplotlib->pymatching)
  Using cached pillow-10.3.0-cp312-cp312-macosx_11_0_arm64.whl.metadata (9.2 kB)
Collecting pyparsing>=2.3.1 (from matplotlib->pymatching)
  Using cached pyparsing-3.1.2-py3-none-any.whl.metadata (5.1 kB)
Collecting python-dateutil>=2.7 (from matplotlib->pymatching)
  Using cached python_dateutil-2.9.0.post0-py2.py3-none-any.whl.metadata (8.4 kB)
Collecting six>=1.5 (from python-dateutil>=2.7->matplotlib->pymatching)
  Using cached six-1.16.0-py2.py3-none-any.whl.metadata (1.8 kB)
Using cached numpy-1.26.4-cp312-cp312-macosx_11_0_arm64.whl (13.7 MB)
Using cached PyMatching-2.2.0-cp312-cp312-macosx_11_0_arm64.whl (365 kB)
Using cached scipy-1.13.0-cp312-cp312-macosx_12_0_arm64.whl (30.4 MB)
Using cached matplotlib-3.8.4-cp312-cp312-macosx_11_0_arm64.whl (7.5 MB)
Using cached networkx-3.3-py3-none-any.whl (1.7 MB)
Using cached tqdm-4.66.2-py3-none-any.whl (78 kB)
Using cached contourpy-1.2.1-cp312-cp312-macosx_11_0_arm64.whl (245 kB)
Using cached cycler-0.12.1-py3-none-any.whl (8.3 kB)
Using cached fonttools-4.51.0-cp312-cp312-macosx_10_9_universal2.whl (2.8 MB)
Using cached kiwisolver-1.4.5-cp312-cp312-macosx_11_0_arm64.whl (64 kB)
Using cached packaging-24.0-py3-none-any.whl (53 kB)
Using cached pillow-10.3.0-cp312-cp312-macosx_11_0_arm64.whl (3.4 MB)
Using cached pyparsing-3.1.2-py3-none-any.whl (103 kB)
Using cached python_dateutil-2.9.0.post0-py2.py3-none-any.whl (229 kB)
Using cached six-1.16.0-py2.py3-none-any.whl (11 kB)
Building wheels for collected packages: ldpc
  Building wheel for ldpc (pyproject.toml): started
  Building wheel for ldpc (pyproject.toml): finished with status 'error'
  error: subprocess-exited-with-error
  
  × Building wheel for ldpc (pyproject.toml) did not run successfully.
  │ exit code: 1
  ╰─> [85 lines of output]
      running bdist_wheel
      running build
      running build_py
      creating build
      creating build/lib.macosx-11.0-arm64-cpython-312
      creating build/lib.macosx-11.0-arm64-cpython-312/ldpc
      copying src/ldpc/codes.py -> build/lib.macosx-11.0-arm64-cpython-312/ldpc
      copying src/ldpc/protograph.py -> build/lib.macosx-11.0-arm64-cpython-312/ldpc
      copying src/ldpc/__init__.py -> build/lib.macosx-11.0-arm64-cpython-312/ldpc
      copying src/ldpc/mod2.py -> build/lib.macosx-11.0-arm64-cpython-312/ldpc
      copying src/ldpc/code_util.py -> build/lib.macosx-11.0-arm64-cpython-312/ldpc
      copying src/ldpc/alist.py -> build/lib.macosx-11.0-arm64-cpython-312/ldpc
      copying src/ldpc/bp_decode_sim.py -> build/lib.macosx-11.0-arm64-cpython-312/ldpc
      creating build/lib.macosx-11.0-arm64-cpython-312/ldpc/tests
      copying src/ldpc/tests/test_ring_of_circulants_f2.py -> build/lib.macosx-11.0-arm64-cpython-312/ldpc/tests
      copying src/ldpc/tests/test_protograph.py -> build/lib.macosx-11.0-arm64-cpython-312/ldpc/tests
      running egg_info
      writing src/ldpc.egg-info/PKG-INFO
      writing dependency_links to src/ldpc.egg-info/dependency_links.txt
      writing requirements to src/ldpc.egg-info/requires.txt
      writing top-level names to src/ldpc.egg-info/top_level.txt
      dependency /private/var/folders/w2/fgml03ld4zg98n4p23qrvzcc0000gn/T/pip-build-env-k9cfizyo/overlay/lib/python3.12/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
      dependency /private/var/folders/w2/fgml03ld4zg98n4p23qrvzcc0000gn/T/pip-build-env-k9cfizyo/overlay/lib/python3.12/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
      dependency /private/var/folders/w2/fgml03ld4zg98n4p23qrvzcc0000gn/T/pip-build-env-k9cfizyo/overlay/lib/python3.12/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
      dependency /private/var/folders/w2/fgml03ld4zg98n4p23qrvzcc0000gn/T/pip-build-env-k9cfizyo/overlay/lib/python3.12/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
      dependency /private/var/folders/w2/fgml03ld4zg98n4p23qrvzcc0000gn/T/pip-build-env-k9cfizyo/overlay/lib/python3.12/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
      dependency /private/var/folders/w2/fgml03ld4zg98n4p23qrvzcc0000gn/T/pip-build-env-k9cfizyo/overlay/lib/python3.12/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
      dependency /private/var/folders/w2/fgml03ld4zg98n4p23qrvzcc0000gn/T/pip-build-env-k9cfizyo/overlay/lib/python3.12/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
      dependency /private/var/folders/w2/fgml03ld4zg98n4p23qrvzcc0000gn/T/pip-build-env-k9cfizyo/overlay/lib/python3.12/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
      dependency /private/var/folders/w2/fgml03ld4zg98n4p23qrvzcc0000gn/T/pip-build-env-k9cfizyo/overlay/lib/python3.12/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
      dependency /private/var/folders/w2/fgml03ld4zg98n4p23qrvzcc0000gn/T/pip-build-env-k9cfizyo/overlay/lib/python3.12/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
      dependency /private/var/folders/w2/fgml03ld4zg98n4p23qrvzcc0000gn/T/pip-build-env-k9cfizyo/overlay/lib/python3.12/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
      dependency /private/var/folders/w2/fgml03ld4zg98n4p23qrvzcc0000gn/T/pip-build-env-k9cfizyo/overlay/lib/python3.12/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
      dependency /private/var/folders/w2/fgml03ld4zg98n4p23qrvzcc0000gn/T/pip-build-env-k9cfizyo/overlay/lib/python3.12/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
      dependency /private/var/folders/w2/fgml03ld4zg98n4p23qrvzcc0000gn/T/pip-build-env-k9cfizyo/overlay/lib/python3.12/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
      dependency /private/var/folders/w2/fgml03ld4zg98n4p23qrvzcc0000gn/T/pip-build-env-k9cfizyo/overlay/lib/python3.12/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
      dependency /private/var/folders/w2/fgml03ld4zg98n4p23qrvzcc0000gn/T/pip-build-env-k9cfizyo/overlay/lib/python3.12/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
      dependency /private/var/folders/w2/fgml03ld4zg98n4p23qrvzcc0000gn/T/pip-build-env-k9cfizyo/overlay/lib/python3.12/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
      dependency /private/var/folders/w2/fgml03ld4zg98n4p23qrvzcc0000gn/T/pip-build-env-k9cfizyo/overlay/lib/python3.12/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
      dependency /private/var/folders/w2/fgml03ld4zg98n4p23qrvzcc0000gn/T/pip-build-env-k9cfizyo/overlay/lib/python3.12/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
      dependency /private/var/folders/w2/fgml03ld4zg98n4p23qrvzcc0000gn/T/pip-build-env-k9cfizyo/overlay/lib/python3.12/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
      reading manifest file 'src/ldpc.egg-info/SOURCES.txt'
      reading manifest template 'MANIFEST.in'
      warning: no files found matching 'src/ldpc/README.md'
      warning: no files found matching 'src/ldpc/LICENSE'
      adding license file 'LICENSE'
      writing manifest file 'src/ldpc.egg-info/SOURCES.txt'
      copying src/ldpc/VERSION -> build/lib.macosx-11.0-arm64-cpython-312/ldpc
      copying src/ldpc/__init__.pxd -> build/lib.macosx-11.0-arm64-cpython-312/ldpc
      copying src/ldpc/bp_decoder.c -> build/lib.macosx-11.0-arm64-cpython-312/ldpc
      copying src/ldpc/bp_decoder.pxd -> build/lib.macosx-11.0-arm64-cpython-312/ldpc
      copying src/ldpc/bp_decoder.pyx -> build/lib.macosx-11.0-arm64-cpython-312/ldpc
      copying src/ldpc/c_util.c -> build/lib.macosx-11.0-arm64-cpython-312/ldpc
      copying src/ldpc/c_util.pxd -> build/lib.macosx-11.0-arm64-cpython-312/ldpc
      copying src/ldpc/c_util.pyx -> build/lib.macosx-11.0-arm64-cpython-312/ldpc
      copying src/ldpc/mod2sparse.c -> build/lib.macosx-11.0-arm64-cpython-312/ldpc
      copying src/ldpc/mod2sparse.pxd -> build/lib.macosx-11.0-arm64-cpython-312/ldpc
      copying src/ldpc/mod2sparse.pyx -> build/lib.macosx-11.0-arm64-cpython-312/ldpc
      copying src/ldpc/osd.c -> build/lib.macosx-11.0-arm64-cpython-312/ldpc
      copying src/ldpc/osd.pxd -> build/lib.macosx-11.0-arm64-cpython-312/ldpc
      copying src/ldpc/osd.pyx -> build/lib.macosx-11.0-arm64-cpython-312/ldpc
      creating build/lib.macosx-11.0-arm64-cpython-312/ldpc/include
      copying src/ldpc/include/COPYRIGHT -> build/lib.macosx-11.0-arm64-cpython-312/ldpc/include
      copying src/ldpc/include/README.md -> build/lib.macosx-11.0-arm64-cpython-312/ldpc/include
      copying src/ldpc/include/binary_char.c -> build/lib.macosx-11.0-arm64-cpython-312/ldpc/include
      copying src/ldpc/include/binary_char.h -> build/lib.macosx-11.0-arm64-cpython-312/ldpc/include
      copying src/ldpc/include/mod2sparse.c -> build/lib.macosx-11.0-arm64-cpython-312/ldpc/include
      copying src/ldpc/include/mod2sparse.h -> build/lib.macosx-11.0-arm64-cpython-312/ldpc/include
      copying src/ldpc/include/mod2sparse_extra.c -> build/lib.macosx-11.0-arm64-cpython-312/ldpc/include
      copying src/ldpc/include/mod2sparse_extra.h -> build/lib.macosx-11.0-arm64-cpython-312/ldpc/include
      copying src/ldpc/include/sort.c -> build/lib.macosx-11.0-arm64-cpython-312/ldpc/include
      copying src/ldpc/include/sort.h -> build/lib.macosx-11.0-arm64-cpython-312/ldpc/include
      running build_ext
      building 'ldpc.bp_decoder' extension
      creating build/temp.macosx-11.0-arm64-cpython-312
      creating build/temp.macosx-11.0-arm64-cpython-312/src
      creating build/temp.macosx-11.0-arm64-cpython-312/src/ldpc
      creating build/temp.macosx-11.0-arm64-cpython-312/src/ldpc/include
      /usr/local/opt/llvm/bin/clang -fno-strict-overflow -DNDEBUG -O2 -Wall -fPIC -O2 -isystem /Users/micciche/Research/QuantumInfo23/JuliaProjects/some_new_folder/.CondaPkg/env/include -arch arm64 -fPIC -O2 -isystem /Users/micciche/Research/QuantumInfo23/JuliaProjects/some_new_folder/.CondaPkg/env/include -arch arm64 -I/usr/local/opt/llvm/include -I/private/var/folders/w2/fgml03ld4zg98n4p23qrvzcc0000gn/T/pip-build-env-k9cfizyo/overlay/lib/python3.12/site-packages/numpy/core/include -Isrc/ldpc/include -I/Users/micciche/Research/QuantumInfo23/JuliaProjects/some_new_folder/.CondaPkg/env/include/python3.12 -c src/ldpc/bp_decoder.c -o build/temp.macosx-11.0-arm64-cpython-312/src/ldpc/bp_decoder.o -std=c11
      In file included from src/ldpc/bp_decoder.c:47:
      /Users/micciche/Research/QuantumInfo23/JuliaProjects/some_new_folder/.CondaPkg/env/include/python3.12/Python.h:23:12: fatal error: 'stdlib.h' file not found
      #  include <stdlib.h>
                 ^~~~~~~~~~
      1 error generated.
      error: command '/usr/local/opt/llvm/bin/clang' failed with exit code 1
      [end of output]
  
  note: This error originates from a subprocess, and is likely not a problem with pip.
  ERROR: Failed building wheel for ldpc
Failed to build ldpc
ERROR: Could not build wheels for ldpc, which is required to install pyproject.toml-based projects
ERROR: LoadError: InitError: failed process: Process(`/Users/micciche/Research/QuantumInfo23/JuliaProjects/some_new_folder/.CondaPkg/env/bin/pip install ldpc numpy pymatching scipy`, ProcessExited(1)) [1]

Stacktrace:
  [1] pipeline_error
    @ ./process.jl:565 [inlined]
  [2] run(::Cmd; wait::Bool)
    @ Base ./process.jl:480
  [3] run(::Cmd)
    @ Base ./process.jl:477
  [4] _run(io::IO, cmd::Cmd, args::Any; flags::Any)
    @ CondaPkg ~/.julia/packages/CondaPkg/MmzxM/src/resolve.jl:398
  [5] (::CondaPkg.var"#37#38"{IOContext{Base.PipeEndpoint}, Vector{String}, Vector{String}, Vector{String}})()
    @ CondaPkg ~/.julia/packages/CondaPkg/MmzxM/src/resolve.jl:332
  [6] withenv(f::Function)
    @ CondaPkg ~/.julia/packages/CondaPkg/MmzxM/src/env.jl:44
  [7] _resolve_pip_install(io::Any, pip_specs::Any, load_path::Any)
    @ CondaPkg ~/.julia/packages/CondaPkg/MmzxM/src/resolve.jl:329
  [8] resolve(; force::Bool, io::IO, interactive::Bool, dry_run::Bool)
    @ CondaPkg ~/.julia/packages/CondaPkg/MmzxM/src/resolve.jl:549
  [9] resolve()
    @ CondaPkg ~/.julia/packages/CondaPkg/MmzxM/src/resolve.jl:405
 [10] envdir()
    @ CondaPkg ~/.julia/packages/CondaPkg/MmzxM/src/env.jl:70
 [11] init_context()
    @ PythonCall.C ~/.julia/packages/PythonCall/bb3ax/src/C/context.jl:63
 [12] __init__()
    @ PythonCall.C ~/.julia/packages/PythonCall/bb3ax/src/C/C.jl:23
 [13] run_module_init(mod::Module, i::Int64)
    @ Base ./loading.jl:1134
 [14] register_restored_modules(sv::Core.SimpleVector, pkg::Base.PkgId, path::String)
    @ Base ./loading.jl:1122
 [15] _include_from_serialized(pkg::Base.PkgId, path::String, ocachepath::String, depmods::Vector{Any})
    @ Base ./loading.jl:1067
 [16] _require_search_from_serialized(pkg::Base.PkgId, sourcepath::String, build_id::UInt128)
    @ Base ./loading.jl:1581
 [17] _require(pkg::Base.PkgId, env::String)
    @ Base ./loading.jl:1938
 [18] __require_prelocked(uuidkey::Base.PkgId, env::String)
    @ Base ./loading.jl:1812
 [19] #invoke_in_world#3
    @ ./essentials.jl:926 [inlined]
 [20] invoke_in_world
    @ ./essentials.jl:923 [inlined]
 [21] _require_prelocked(uuidkey::Base.PkgId, env::String)
    @ Base ./loading.jl:1803
 [22] macro expansion
    @ ./loading.jl:1790 [inlined]
 [23] macro expansion
    @ ./lock.jl:267 [inlined]
 [24] __require(into::Module, mod::Symbol)
    @ Base ./loading.jl:1753
 [25] #invoke_in_world#3
    @ ./essentials.jl:926 [inlined]
 [26] invoke_in_world
    @ ./essentials.jl:923 [inlined]
 [27] require(into::Module, mod::Symbol)
    @ Base ./loading.jl:1746
 [28] include
    @ ./Base.jl:495 [inlined]
 [29] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)
    @ Base ./loading.jl:2222
 [30] top-level scope
    @ stdin:3
during initialization of module C
in expression starting at /Users/micciche/.julia/packages/PyQDecoders/nk69c/src/PyQDecoders.jl:1
in expression starting at stdin:3
  ✗ PyQDecoders
  0 dependencies successfully precompiled in 48 seconds. 23 already precompiled.

ERROR: The following 1 direct dependency failed to precompile:

PyQDecoders [17f5de1a-9b79-4409-a58d-4d45812840f7]

Failed to precompile PyQDecoders [17f5de1a-9b79-4409-a58d-4d45812840f7] to "/Users/micciche/.julia/compiled/v1.10/PyQDecoders/jl_XdgcBE".
    CondaPkg Found dependencies: /Users/micciche/.julia/packages/PythonCall/bb3ax/CondaPkg.toml
    CondaPkg Found dependencies: /Users/micciche/.julia/packages/PyQDecoders/nk69c/CondaPkg.toml
    CondaPkg Resolving changes
             + ldpc (pip)
             + numpy (pip)
             + pip
             + pymatching (pip)
             + python
             + scipy (pip)
    CondaPkg Removing environment
             │ /Users/micciche/.julia/artifacts/98aba21a6802e06a5d2e7c48633d7dc1c3d4a749/bin/micromamba
             │ -r /Users/micciche/.julia/scratchspaces/0b3b1443-0f03-428d-bdfb-f27f9c1191ea/root
             │ remove
             │ -y
             │ -p /Users/micciche/Research/QuantumInfo23/JuliaProjects/some_new_folder/.CondaPkg/env
             └ --all
Transaction

  Prefix: /Users/micciche/Research/QuantumInfo23/JuliaProjects/some_new_folder/.CondaPkg/env

  Removing specs:

   - bzip2
   - ca-certificates
   - libexpat
   - libffi
   - libsqlite
   - libzlib
   - ncurses
   - openssl
   - pip
   - python
   - readline
   - setuptools
   - tk
   - tzdata
   - wheel
   - xz


  Package                 Version  Build               Channel           Size
───────────────────────────────────────────────────────────────────────────────
  Remove:
───────────────────────────────────────────────────────────────────────────────

  - pip                      24.0  pyhd8ed1ab_0        conda-forge     Cached
  - python                 3.12.3  h4a7b5fc_0_cpython  conda-forge     Cached
  - setuptools             69.5.1  pyhd8ed1ab_0        conda-forge     Cached
  - wheel                  0.43.0  pyhd8ed1ab_1        conda-forge     Cached
  - xz                      5.2.6  h57fd34a_0          conda-forge     Cached
  - tzdata                  2024a  h0c530f3_0          conda-forge     Cached
  - tk                     8.6.13  h5083fa2_1          conda-forge     Cached
  - readline                  8.2  h92ec313_1          conda-forge     Cached
  - openssl                 3.2.1  h0d3ecfb_1          conda-forge     Cached
  - libsqlite              3.45.3  h091b4b1_0          conda-forge     Cached
  - libffi                  3.4.2  h3422bc3_5          conda-forge     Cached
  - libexpat                2.6.2  hebf3989_0          conda-forge     Cached
  - bzip2                   1.0.8  h93a5062_5          conda-forge     Cached
  - ncurses          6.4.20240210  h078ce10_0          conda-forge     Cached
  - ca-certificates      2024.2.2  hf0a4a13_0          conda-forge     Cached
  - libzlib                1.2.13  h53f4e23_5          conda-forge     Cached

  Summary:

  Remove: 16 packages

  Total download: 0 B

───────────────────────────────────────────────────────────────────────────────



Transaction starting
Unlinking pip-24.0-pyhd8ed1ab_0
Unlinking python-3.12.3-h4a7b5fc_0_cpython
Unlinking setuptools-69.5.1-pyhd8ed1ab_0
Unlinking wheel-0.43.0-pyhd8ed1ab_1
Unlinking xz-5.2.6-h57fd34a_0
Unlinking tzdata-2024a-h0c530f3_0
Unlinking tk-8.6.13-h5083fa2_1
Unlinking readline-8.2-h92ec313_1
Unlinking openssl-3.2.1-h0d3ecfb_1
Unlinking libsqlite-3.45.3-h091b4b1_0
Unlinking libffi-3.4.2-h3422bc3_5
Unlinking libexpat-2.6.2-hebf3989_0
Unlinking bzip2-1.0.8-h93a5062_5
Unlinking ncurses-6.4.20240210-h078ce10_0
Unlinking ca-certificates-2024.2.2-hf0a4a13_0
Unlinking libzlib-1.2.13-h53f4e23_5

Transaction finished

To activate this environment, use:

    micromamba activate /Users/micciche/Research/QuantumInfo23/JuliaProjects/some_new_folder/.CondaPkg/env

Or to execute a single command in this environment, use:

    micromamba run -p /Users/micciche/Research/QuantumInfo23/JuliaProjects/some_new_folder/.CondaPkg/env mycommand

    CondaPkg Creating environment
             │ /Users/micciche/.julia/artifacts/98aba21a6802e06a5d2e7c48633d7dc1c3d4a749/bin/micromamba
             │ -r /Users/micciche/.julia/scratchspaces/0b3b1443-0f03-428d-bdfb-f27f9c1191ea/root
             │ create
             │ -y
             │ -p /Users/micciche/Research/QuantumInfo23/JuliaProjects/some_new_folder/.CondaPkg/env
             │ --override-channels
             │ --no-channel-priority
             │ pip[version='>=22.0.0']
             │ python[version='>=3.7,<4',channel='conda-forge',build='*cpython*']
             └ -c conda-forge
conda-forge/osx-arm64                                       Using cache
conda-forge/noarch                                          Using cache

Transaction

  Prefix: /Users/micciche/Research/QuantumInfo23/JuliaProjects/some_new_folder/.CondaPkg/env

  Updating specs:

   - pip[version='>=22.0.0']
   - conda-forge::python[version='>=3.7,<4',build=*cpython*]


  Package                 Version  Build               Channel           Size
───────────────────────────────────────────────────────────────────────────────
  Install:
───────────────────────────────────────────────────────────────────────────────

  + xz                      5.2.6  h57fd34a_0          conda-forge     Cached
  + libexpat                2.6.2  hebf3989_0          conda-forge     Cached
  + ncurses          6.4.20240210  h078ce10_0          conda-forge     Cached
  + bzip2                   1.0.8  h93a5062_5          conda-forge     Cached
  + libffi                  3.4.2  h3422bc3_5          conda-forge     Cached
  + libzlib                1.2.13  h53f4e23_5          conda-forge     Cached
  + ca-certificates      2024.2.2  hf0a4a13_0          conda-forge     Cached
  + readline                  8.2  h92ec313_1          conda-forge     Cached
  + tk                     8.6.13  h5083fa2_1          conda-forge     Cached
  + libsqlite              3.45.3  h091b4b1_0          conda-forge     Cached
  + openssl                 3.2.1  h0d3ecfb_1          conda-forge     Cached
  + tzdata                  2024a  h0c530f3_0          conda-forge     Cached
  + python                 3.12.3  h4a7b5fc_0_cpython  conda-forge     Cached
  + wheel                  0.43.0  pyhd8ed1ab_1        conda-forge     Cached
  + setuptools             69.5.1  pyhd8ed1ab_0        conda-forge     Cached
  + pip                      24.0  pyhd8ed1ab_0        conda-forge     Cached

  Summary:

  Install: 16 packages

  Total download: 0 B

───────────────────────────────────────────────────────────────────────────────



Transaction starting
Linking xz-5.2.6-h57fd34a_0
Linking libexpat-2.6.2-hebf3989_0
Linking ncurses-6.4.20240210-h078ce10_0
Linking bzip2-1.0.8-h93a5062_5
Linking libffi-3.4.2-h3422bc3_5
Linking libzlib-1.2.13-h53f4e23_5
Linking ca-certificates-2024.2.2-hf0a4a13_0
Linking readline-8.2-h92ec313_1
Linking tk-8.6.13-h5083fa2_1
Linking libsqlite-3.45.3-h091b4b1_0
Linking openssl-3.2.1-h0d3ecfb_1
Linking tzdata-2024a-h0c530f3_0
Linking python-3.12.3-h4a7b5fc_0_cpython
Linking wheel-0.43.0-pyhd8ed1ab_1
Linking setuptools-69.5.1-pyhd8ed1ab_0
Linking pip-24.0-pyhd8ed1ab_0

Transaction finished

To activate this environment, use:

    micromamba activate /Users/micciche/Research/QuantumInfo23/JuliaProjects/some_new_folder/.CondaPkg/env

Or to execute a single command in this environment, use:

    micromamba run -p /Users/micciche/Research/QuantumInfo23/JuliaProjects/some_new_folder/.CondaPkg/env mycommand

    CondaPkg Installing Pip packages
             │ /Users/micciche/Research/QuantumInfo23/JuliaProjects/some_new_folder/.CondaPkg/env/bin/pip
             │ install
             │ ldpc
             │ numpy
             │ pymatching
             └ scipy
Collecting ldpc
  Using cached ldpc-0.1.51.tar.gz (367 kB)
  Installing build dependencies: started
  Installing build dependencies: finished with status 'done'
  Getting requirements to build wheel: started
  Getting requirements to build wheel: finished with status 'done'
  Installing backend dependencies: started
  Installing backend dependencies: finished with status 'done'
  Preparing metadata (pyproject.toml): started
  Preparing metadata (pyproject.toml): finished with status 'done'
Collecting numpy
  Using cached numpy-1.26.4-cp312-cp312-macosx_11_0_arm64.whl.metadata (61 kB)
Collecting pymatching
  Using cached PyMatching-2.2.0-cp312-cp312-macosx_11_0_arm64.whl.metadata (16 kB)
Collecting scipy
  Using cached scipy-1.13.0-cp312-cp312-macosx_12_0_arm64.whl.metadata (60 kB)
Collecting tqdm (from ldpc)
  Using cached tqdm-4.66.2-py3-none-any.whl.metadata (57 kB)
Collecting networkx (from pymatching)
  Using cached networkx-3.3-py3-none-any.whl.metadata (5.1 kB)
Collecting matplotlib (from pymatching)
  Using cached matplotlib-3.8.4-cp312-cp312-macosx_11_0_arm64.whl.metadata (5.8 kB)
Collecting contourpy>=1.0.1 (from matplotlib->pymatching)
  Using cached contourpy-1.2.1-cp312-cp312-macosx_11_0_arm64.whl.metadata (5.8 kB)
Collecting cycler>=0.10 (from matplotlib->pymatching)
  Using cached cycler-0.12.1-py3-none-any.whl.metadata (3.8 kB)
Collecting fonttools>=4.22.0 (from matplotlib->pymatching)
  Using cached fonttools-4.51.0-cp312-cp312-macosx_10_9_universal2.whl.metadata (159 kB)
Collecting kiwisolver>=1.3.1 (from matplotlib->pymatching)
  Using cached kiwisolver-1.4.5-cp312-cp312-macosx_11_0_arm64.whl.metadata (6.4 kB)
Collecting packaging>=20.0 (from matplotlib->pymatching)
  Using cached packaging-24.0-py3-none-any.whl.metadata (3.2 kB)
Collecting pillow>=8 (from matplotlib->pymatching)
  Using cached pillow-10.3.0-cp312-cp312-macosx_11_0_arm64.whl.metadata (9.2 kB)
Collecting pyparsing>=2.3.1 (from matplotlib->pymatching)
  Using cached pyparsing-3.1.2-py3-none-any.whl.metadata (5.1 kB)
Collecting python-dateutil>=2.7 (from matplotlib->pymatching)
  Using cached python_dateutil-2.9.0.post0-py2.py3-none-any.whl.metadata (8.4 kB)
Collecting six>=1.5 (from python-dateutil>=2.7->matplotlib->pymatching)
  Using cached six-1.16.0-py2.py3-none-any.whl.metadata (1.8 kB)
Using cached numpy-1.26.4-cp312-cp312-macosx_11_0_arm64.whl (13.7 MB)
Using cached PyMatching-2.2.0-cp312-cp312-macosx_11_0_arm64.whl (365 kB)
Using cached scipy-1.13.0-cp312-cp312-macosx_12_0_arm64.whl (30.4 MB)
Using cached matplotlib-3.8.4-cp312-cp312-macosx_11_0_arm64.whl (7.5 MB)
Using cached networkx-3.3-py3-none-any.whl (1.7 MB)
Using cached tqdm-4.66.2-py3-none-any.whl (78 kB)
Using cached contourpy-1.2.1-cp312-cp312-macosx_11_0_arm64.whl (245 kB)
Using cached cycler-0.12.1-py3-none-any.whl (8.3 kB)
Using cached fonttools-4.51.0-cp312-cp312-macosx_10_9_universal2.whl (2.8 MB)
Using cached kiwisolver-1.4.5-cp312-cp312-macosx_11_0_arm64.whl (64 kB)
Using cached packaging-24.0-py3-none-any.whl (53 kB)
Using cached pillow-10.3.0-cp312-cp312-macosx_11_0_arm64.whl (3.4 MB)
Using cached pyparsing-3.1.2-py3-none-any.whl (103 kB)
Using cached python_dateutil-2.9.0.post0-py2.py3-none-any.whl (229 kB)
Using cached six-1.16.0-py2.py3-none-any.whl (11 kB)
Building wheels for collected packages: ldpc
  Building wheel for ldpc (pyproject.toml): started
  Building wheel for ldpc (pyproject.toml): finished with status 'error'
  error: subprocess-exited-with-error
  
  × Building wheel for ldpc (pyproject.toml) did not run successfully.
  │ exit code: 1
  ╰─> [85 lines of output]
      running bdist_wheel
      running build
      running build_py
      creating build
      creating build/lib.macosx-11.0-arm64-cpython-312
      creating build/lib.macosx-11.0-arm64-cpython-312/ldpc
      copying src/ldpc/codes.py -> build/lib.macosx-11.0-arm64-cpython-312/ldpc
      copying src/ldpc/protograph.py -> build/lib.macosx-11.0-arm64-cpython-312/ldpc
      copying src/ldpc/__init__.py -> build/lib.macosx-11.0-arm64-cpython-312/ldpc
      copying src/ldpc/mod2.py -> build/lib.macosx-11.0-arm64-cpython-312/ldpc
      copying src/ldpc/code_util.py -> build/lib.macosx-11.0-arm64-cpython-312/ldpc
      copying src/ldpc/alist.py -> build/lib.macosx-11.0-arm64-cpython-312/ldpc
      copying src/ldpc/bp_decode_sim.py -> build/lib.macosx-11.0-arm64-cpython-312/ldpc
      creating build/lib.macosx-11.0-arm64-cpython-312/ldpc/tests
      copying src/ldpc/tests/test_ring_of_circulants_f2.py -> build/lib.macosx-11.0-arm64-cpython-312/ldpc/tests
      copying src/ldpc/tests/test_protograph.py -> build/lib.macosx-11.0-arm64-cpython-312/ldpc/tests
      running egg_info
      writing src/ldpc.egg-info/PKG-INFO
      writing dependency_links to src/ldpc.egg-info/dependency_links.txt
      writing requirements to src/ldpc.egg-info/requires.txt
      writing top-level names to src/ldpc.egg-info/top_level.txt
      dependency /private/var/folders/w2/fgml03ld4zg98n4p23qrvzcc0000gn/T/pip-build-env-k9cfizyo/overlay/lib/python3.12/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
      dependency /private/var/folders/w2/fgml03ld4zg98n4p23qrvzcc0000gn/T/pip-build-env-k9cfizyo/overlay/lib/python3.12/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
      dependency /private/var/folders/w2/fgml03ld4zg98n4p23qrvzcc0000gn/T/pip-build-env-k9cfizyo/overlay/lib/python3.12/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
      dependency /private/var/folders/w2/fgml03ld4zg98n4p23qrvzcc0000gn/T/pip-build-env-k9cfizyo/overlay/lib/python3.12/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
      dependency /private/var/folders/w2/fgml03ld4zg98n4p23qrvzcc0000gn/T/pip-build-env-k9cfizyo/overlay/lib/python3.12/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
      dependency /private/var/folders/w2/fgml03ld4zg98n4p23qrvzcc0000gn/T/pip-build-env-k9cfizyo/overlay/lib/python3.12/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
      dependency /private/var/folders/w2/fgml03ld4zg98n4p23qrvzcc0000gn/T/pip-build-env-k9cfizyo/overlay/lib/python3.12/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
      dependency /private/var/folders/w2/fgml03ld4zg98n4p23qrvzcc0000gn/T/pip-build-env-k9cfizyo/overlay/lib/python3.12/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
      dependency /private/var/folders/w2/fgml03ld4zg98n4p23qrvzcc0000gn/T/pip-build-env-k9cfizyo/overlay/lib/python3.12/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
      dependency /private/var/folders/w2/fgml03ld4zg98n4p23qrvzcc0000gn/T/pip-build-env-k9cfizyo/overlay/lib/python3.12/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
      dependency /private/var/folders/w2/fgml03ld4zg98n4p23qrvzcc0000gn/T/pip-build-env-k9cfizyo/overlay/lib/python3.12/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
      dependency /private/var/folders/w2/fgml03ld4zg98n4p23qrvzcc0000gn/T/pip-build-env-k9cfizyo/overlay/lib/python3.12/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
      dependency /private/var/folders/w2/fgml03ld4zg98n4p23qrvzcc0000gn/T/pip-build-env-k9cfizyo/overlay/lib/python3.12/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
      dependency /private/var/folders/w2/fgml03ld4zg98n4p23qrvzcc0000gn/T/pip-build-env-k9cfizyo/overlay/lib/python3.12/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
      dependency /private/var/folders/w2/fgml03ld4zg98n4p23qrvzcc0000gn/T/pip-build-env-k9cfizyo/overlay/lib/python3.12/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
      dependency /private/var/folders/w2/fgml03ld4zg98n4p23qrvzcc0000gn/T/pip-build-env-k9cfizyo/overlay/lib/python3.12/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative
      dependency /private/var/folders/w2/fgml03ld4zg98n4p23qrvzcc0000gn/T/pip-build-env-k9cfizyo/overlay/lib/python3.12/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative
      dependency /private/var/folders/w2/fgml03ld4zg98n4p23qrvzcc0000gn/T/pip-build-env-k9cfizyo/overlay/lib/python3.12/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative
      dependency /private/var/folders/w2/fgml03ld4zg98n4p23qrvzcc0000gn/T/pip-build-env-k9cfizyo/overlay/lib/python3.12/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative
      dependency /private/var/folders/w2/fgml03ld4zg98n4p23qrvzcc0000gn/T/pip-build-env-k9cfizyo/overlay/lib/python3.12/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative
      reading manifest file 'src/ldpc.egg-info/SOURCES.txt'
      reading manifest template 'MANIFEST.in'
      warning: no files found matching 'src/ldpc/README.md'
      warning: no files found matching 'src/ldpc/LICENSE'
      adding license file 'LICENSE'
      writing manifest file 'src/ldpc.egg-info/SOURCES.txt'
      copying src/ldpc/VERSION -> build/lib.macosx-11.0-arm64-cpython-312/ldpc
      copying src/ldpc/__init__.pxd -> build/lib.macosx-11.0-arm64-cpython-312/ldpc
      copying src/ldpc/bp_decoder.c -> build/lib.macosx-11.0-arm64-cpython-312/ldpc
      copying src/ldpc/bp_decoder.pxd -> build/lib.macosx-11.0-arm64-cpython-312/ldpc
      copying src/ldpc/bp_decoder.pyx -> build/lib.macosx-11.0-arm64-cpython-312/ldpc
      copying src/ldpc/c_util.c -> build/lib.macosx-11.0-arm64-cpython-312/ldpc
      copying src/ldpc/c_util.pxd -> build/lib.macosx-11.0-arm64-cpython-312/ldpc
      copying src/ldpc/c_util.pyx -> build/lib.macosx-11.0-arm64-cpython-312/ldpc
      copying src/ldpc/mod2sparse.c -> build/lib.macosx-11.0-arm64-cpython-312/ldpc
      copying src/ldpc/mod2sparse.pxd -> build/lib.macosx-11.0-arm64-cpython-312/ldpc
      copying src/ldpc/mod2sparse.pyx -> build/lib.macosx-11.0-arm64-cpython-312/ldpc
      copying src/ldpc/osd.c -> build/lib.macosx-11.0-arm64-cpython-312/ldpc
      copying src/ldpc/osd.pxd -> build/lib.macosx-11.0-arm64-cpython-312/ldpc
      copying src/ldpc/osd.pyx -> build/lib.macosx-11.0-arm64-cpython-312/ldpc
      creating build/lib.macosx-11.0-arm64-cpython-312/ldpc/include
      copying src/ldpc/include/COPYRIGHT -> build/lib.macosx-11.0-arm64-cpython-312/ldpc/include
      copying src/ldpc/include/README.md -> build/lib.macosx-11.0-arm64-cpython-312/ldpc/include
      copying src/ldpc/include/binary_char.c -> build/lib.macosx-11.0-arm64-cpython-312/ldpc/include
      copying src/ldpc/include/binary_char.h -> build/lib.macosx-11.0-arm64-cpython-312/ldpc/include
      copying src/ldpc/include/mod2sparse.c -> build/lib.macosx-11.0-arm64-cpython-312/ldpc/include
      copying src/ldpc/include/mod2sparse.h -> build/lib.macosx-11.0-arm64-cpython-312/ldpc/include
      copying src/ldpc/include/mod2sparse_extra.c -> build/lib.macosx-11.0-arm64-cpython-312/ldpc/include
      copying src/ldpc/include/mod2sparse_extra.h -> build/lib.macosx-11.0-arm64-cpython-312/ldpc/include
      copying src/ldpc/include/sort.c -> build/lib.macosx-11.0-arm64-cpython-312/ldpc/include
      copying src/ldpc/include/sort.h -> build/lib.macosx-11.0-arm64-cpython-312/ldpc/include
      running build_ext
      building 'ldpc.bp_decoder' extension
      creating build/temp.macosx-11.0-arm64-cpython-312
      creating build/temp.macosx-11.0-arm64-cpython-312/src
      creating build/temp.macosx-11.0-arm64-cpython-312/src/ldpc
      creating build/temp.macosx-11.0-arm64-cpython-312/src/ldpc/include
      /usr/local/opt/llvm/bin/clang -fno-strict-overflow -DNDEBUG -O2 -Wall -fPIC -O2 -isystem /Users/micciche/Research/QuantumInfo23/JuliaProjects/some_new_folder/.CondaPkg/env/include -arch arm64 -fPIC -O2 -isystem /Users/micciche/Research/QuantumInfo23/JuliaProjects/some_new_folder/.CondaPkg/env/include -arch arm64 -I/usr/local/opt/llvm/include -I/private/var/folders/w2/fgml03ld4zg98n4p23qrvzcc0000gn/T/pip-build-env-k9cfizyo/overlay/lib/python3.12/site-packages/numpy/core/include -Isrc/ldpc/include -I/Users/micciche/Research/QuantumInfo23/JuliaProjects/some_new_folder/.CondaPkg/env/include/python3.12 -c src/ldpc/bp_decoder.c -o build/temp.macosx-11.0-arm64-cpython-312/src/ldpc/bp_decoder.o -std=c11
      In file included from src/ldpc/bp_decoder.c:47:
      /Users/micciche/Research/QuantumInfo23/JuliaProjects/some_new_folder/.CondaPkg/env/include/python3.12/Python.h:23:12: fatal error: 'stdlib.h' file not found
      #  include <stdlib.h>
                 ^~~~~~~~~~
      1 error generated.
      error: command '/usr/local/opt/llvm/bin/clang' failed with exit code 1
      [end of output]
  
  note: This error originates from a subprocess, and is likely not a problem with pip.
  ERROR: Failed building wheel for ldpc
Failed to build ldpc
ERROR: Could not build wheels for ldpc, which is required to install pyproject.toml-based projects
ERROR: LoadError: InitError: failed process: Process(`/Users/micciche/Research/QuantumInfo23/JuliaProjects/some_new_folder/.CondaPkg/env/bin/pip install ldpc numpy pymatching scipy`, ProcessExited(1)) [1]

Stacktrace:
  [1] pipeline_error
    @ ./process.jl:565 [inlined]
  [2] run(::Cmd; wait::Bool)
    @ Base ./process.jl:480
  [3] run(::Cmd)
    @ Base ./process.jl:477
  [4] _run(io::IO, cmd::Cmd, args::Any; flags::Any)
    @ CondaPkg ~/.julia/packages/CondaPkg/MmzxM/src/resolve.jl:398
  [5] (::CondaPkg.var"#37#38"{IOContext{Base.PipeEndpoint}, Vector{String}, Vector{String}, Vector{String}})()
    @ CondaPkg ~/.julia/packages/CondaPkg/MmzxM/src/resolve.jl:332
  [6] withenv(f::Function)
    @ CondaPkg ~/.julia/packages/CondaPkg/MmzxM/src/env.jl:44
  [7] _resolve_pip_install(io::Any, pip_specs::Any, load_path::Any)
    @ CondaPkg ~/.julia/packages/CondaPkg/MmzxM/src/resolve.jl:329
  [8] resolve(; force::Bool, io::IO, interactive::Bool, dry_run::Bool)
    @ CondaPkg ~/.julia/packages/CondaPkg/MmzxM/src/resolve.jl:549
  [9] resolve()
    @ CondaPkg ~/.julia/packages/CondaPkg/MmzxM/src/resolve.jl:405
 [10] envdir()
    @ CondaPkg ~/.julia/packages/CondaPkg/MmzxM/src/env.jl:70
 [11] init_context()
    @ PythonCall.C ~/.julia/packages/PythonCall/bb3ax/src/C/context.jl:63
 [12] __init__()
    @ PythonCall.C ~/.julia/packages/PythonCall/bb3ax/src/C/C.jl:23
 [13] run_module_init(mod::Module, i::Int64)
    @ Base ./loading.jl:1134
 [14] register_restored_modules(sv::Core.SimpleVector, pkg::Base.PkgId, path::String)
    @ Base ./loading.jl:1122
 [15] _include_from_serialized(pkg::Base.PkgId, path::String, ocachepath::String, depmods::Vector{Any})
    @ Base ./loading.jl:1067
 [16] _require_search_from_serialized(pkg::Base.PkgId, sourcepath::String, build_id::UInt128)
    @ Base ./loading.jl:1581
 [17] _require(pkg::Base.PkgId, env::String)
    @ Base ./loading.jl:1938
 [18] __require_prelocked(uuidkey::Base.PkgId, env::String)
    @ Base ./loading.jl:1812
 [19] #invoke_in_world#3
    @ ./essentials.jl:926 [inlined]
 [20] invoke_in_world
    @ ./essentials.jl:923 [inlined]
 [21] _require_prelocked(uuidkey::Base.PkgId, env::String)
    @ Base ./loading.jl:1803
 [22] macro expansion
    @ ./loading.jl:1790 [inlined]
 [23] macro expansion
    @ ./lock.jl:267 [inlined]
 [24] __require(into::Module, mod::Symbol)
    @ Base ./loading.jl:1753
 [25] #invoke_in_world#3
    @ ./essentials.jl:926 [inlined]
 [26] invoke_in_world
    @ ./essentials.jl:923 [inlined]
 [27] require(into::Module, mod::Symbol)
    @ Base ./loading.jl:1746
 [28] include
    @ ./Base.jl:495 [inlined]
 [29] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)
    @ Base ./loading.jl:2222
 [30] top-level scope
    @ stdin:3
during initialization of module C
in expression starting at /Users/micciche/.julia/packages/PyQDecoders/nk69c/src/PyQDecoders.jl:1
in expression starting at stdin:
Stacktrace:
  [1] pkgerror(msg::String)
    @ Pkg.Types ~/.julia/juliaup/julia-1.10.2+0.aarch64.apple.darwin14/share/julia/stdlib/v1.10/Pkg/src/Types.jl:70
  [2] precompile(ctx::Pkg.Types.Context, pkgs::Vector{…}; internal_call::Bool, strict::Bool, warn_loaded::Bool, already_instantiated::Bool, timing::Bool, _from_loading::Bool, kwargs::@Kwargs{…})
    @ Pkg.API ~/.julia/juliaup/julia-1.10.2+0.aarch64.apple.darwin14/share/julia/stdlib/v1.10/Pkg/src/API.jl:1659
  [3] precompile(pkgs::Vector{Pkg.Types.PackageSpec}; io::Base.TTY, kwargs::@Kwargs{_from_loading::Bool})
    @ Pkg.API ~/.julia/juliaup/julia-1.10.2+0.aarch64.apple.darwin14/share/julia/stdlib/v1.10/Pkg/src/API.jl:159
  [4] precompile
    @ ~/.julia/juliaup/julia-1.10.2+0.aarch64.apple.darwin14/share/julia/stdlib/v1.10/Pkg/src/API.jl:147 [inlined]
  [5] #precompile#114
    @ ~/.julia/juliaup/julia-1.10.2+0.aarch64.apple.darwin14/share/julia/stdlib/v1.10/Pkg/src/API.jl:146 [inlined]
  [6] #invokelatest#2
    @ ./essentials.jl:894 [inlined]
  [7] invokelatest
    @ ./essentials.jl:889 [inlined]
  [8] _require(pkg::Base.PkgId, env::String)
    @ Base ./loading.jl:1963
  [9] __require_prelocked(uuidkey::Base.PkgId, env::String)
    @ Base ./loading.jl:1812
 [10] #invoke_in_world#3
    @ ./essentials.jl:926 [inlined]
 [11] invoke_in_world
    @ ./essentials.jl:923 [inlined]
 [12] _require_prelocked(uuidkey::Base.PkgId, env::String)
    @ Base ./loading.jl:1803
 [13] macro expansion
    @ ./loading.jl:1790 [inlined]
 [14] macro expansion
    @ ./lock.jl:267 [inlined]
 [15] __require(into::Module, mod::Symbol)
    @ Base ./loading.jl:1753
 [16] #invoke_in_world#3
    @ ./essentials.jl:926 [inlined]
 [17] invoke_in_world
    @ ./essentials.jl:923 [inlined]
 [18] require(into::Module, mod::Symbol)
    @ Base ./loading.jl:1746
Some type information was truncated. Use `show(err)` to see complete types.

julia> versioninfo(verbose=true)
Julia Version 1.10.2
Commit bd47eca2c8a (2024-03-01 10:14 UTC)
Build Info:
  Official https://julialang.org/ release
Platform Info:
  OS: macOS (arm64-apple-darwin22.4.0)
  uname: Darwin 23.4.0 Darwin Kernel Version 23.4.0: Fri Mar 15 00:10:42 PDT 2024; root:xnu-10063.101.17~1/RELEASE_ARM64_T6000 arm64 arm
  CPU: Apple M1 Pro: 
                 speed         user         nice          sys         idle          irq
       #1-10  2400 MHz    5076776 s          0 s    1636521 s   57530966 s          0 s
  Memory: 16.0 GB (428.4375 MB free)
  Uptime: 1.952713e6 sec
  Load Avg:  3.2705078125  3.8427734375  4.2900390625
  WORD_SIZE: 64
  LIBM: libopenlibm
  LLVM: libLLVM-15.0.7 (ORCJIT, apple-m1)
Threads: 8 default, 0 interactive, 4 GC (on 8 virtual cores)
Environment:
  PATH = /Users/micciche/.pyenv/shims:/usr/local/opt/llvm/bin:/opt/homebrew/bin:/opt/homebrew/sbin:/usr/local/bin:/System/Cryptexes/App/usr/bin:/usr/bin:/bin:/usr/sbin:/sbin:/var/run/com.apple.security.cryptexd/codex.system/bootstrap/usr/local/bin:/var/run/com.apple.security.cryptexd/codex.system/bootstrap/usr/bin:/var/run/com.apple.security.cryptexd/codex.system/bootstrap/usr/appleinternal/bin:/Library/Apple/usr/bin:/Library/TeX/texbin:/Applications/VMware Fusion.app/Contents/Public:/Users/micciche/.pyenv/bin:/opt/homebrew/Caskroom/miniforge/base/condabin:/usr/local/opt/llvm/bin:/opt/homebrew/bin:/opt/homebrew/sbin
  HOME = /Users/micciche
  XPC_FLAGS = 0x0
  HOMEBREW_PREFIX = /opt/homebrew
  HOMEBREW_CELLAR = /opt/homebrew/Cellar
  HOMEBREW_REPOSITORY = /opt/homebrew
  MANPATH = /opt/homebrew/share/man:/usr/share/man:/usr/local/share/man:/Library/TeX/Distributions/.DefaultTeX/Contents/Man:/opt/homebrew/share/man::
  INFOPATH = /opt/homebrew/share/info:/opt/homebrew/share/info:
  LDFLAGS = -L/usr/local/opt/llvm/lib
  CPPFLAGS = -I/usr/local/opt/llvm/include
  TERM = xterm-256color

@Krastanov
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@amicciche , your particular error happens because you do not have all necessary C-compiler infrastructure installed on your machine. The Python ldpc package requires a complete set of library headers. See for more info here: https://developer.apple.com/forums/thread/104296

The gist of it is:

  • do xcode-select --install
  • then manually also install this system-provided package with legacy headers /Library/Developer/CommandLineTools/Packages/macOS_SDK_headers_for_macOS_10.14.pkg (I do not know why python wants the legacy headers, probably just something outdated in the python package)

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@Krastanov @amicciche